PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g27607.4.p
Common NameBRADI_4g27607
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 187aa    MW: 20459.3 Da    PI: 8.497
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g27607.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.71.5e-091203655
           G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                      m+vkgLtl h+kSHLQkYR+
  Bradi4g27607.4.p  1 MGVKGLTLFHLKSHLQKYRM 20
                      99*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-8121IPR009057Homeodomain-like
PfamPF143799.6E-2061106IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGVKGLTLFH LKSHLQKYRM GKQTGKETSE QSKDGSYLLD AQGGMSLSPR VSTQDAKESQ  60
EVKEALRAQM EMQRCLHDKV EVQKHVDIRM GAHQTYINNI LAKACKIVSE QFASSNFSIS  120
DHNLPELSSC SVMCDTPTDA LSSSIFHQLS VSSMSLHSPG GGKPSPSGME GQLLLQRSPE  180
FKRKSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g27607.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577957.11e-134protein PHR1-LIKE 2
TrEMBLA0A0Q3LBB31e-134A0A0Q3LBB3_BRADI; Uncharacterized protein
TrEMBLI1IP831e-133I1IP83_BRADI; Uncharacterized protein
STRINGBRADI4G27607.11e-134(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.14e-35G2-like family protein