PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g29010.1.p
Common NameBRADI_4g29010, LOC100838838
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 283aa    MW: 30380.7 Da    PI: 6.5178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g29010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.2e-21109158255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Bradi4g29010.1.p 109 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 158
                       59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-30108168No hitNo description
Gene3DG3DSA:3.30.730.108.4E-33109168IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-23109168IPR016177DNA-binding domain
SMARTSM003801.5E-35109172IPR001471AP2/ERF domain
PROSITE profilePS5103223.354109166IPR001471AP2/ERF domain
PRINTSPR003672.3E-11110121IPR001471AP2/ERF domain
PfamPF008476.8E-15110158IPR001471AP2/ERF domain
PRINTSPR003672.3E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASASPPPL NSHPSPTSPF SFPHAAYQGY PYGVQAQAQA  60
ELSPAEMHYI QARLHLQRQT GPPGHLGPRA QPMKPASTAA ATPPRPQKLY RGVRQRHWGK  120
WVAEIRLPRN RTRLWLGTFD TAEEAALAYD QAAYRLRGDA ARLNFPDNAA SRGPLDASVD  180
AKLQTLCQNI TASKNAKKSK SSSASAATSS TPTSNCSSPS SDEASSSLES AESSPSPATN  240
AAEVPEMQQL DFSEAPWDEA AGFALTKYPS YEIDWDSLLA TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20108166463ATERF1
3gcc_A2e-20108166463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g29010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090750.0BT009075.1 Triticum aestivum clone wip1c.pk004.o24:fis, full insert mRNA sequence.
GenBankDQ3344070.0DQ334407.1 Triticum aestivum drought-responsive factor-like transcription factor DRFL1a (DRFL1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578039.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLI1IPP60.0I1IPP6_BRADI; Uncharacterized protein
STRINGBRADI4G29010.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-42ERF family protein