PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g29380.1.p
Common NameBRADI_4g29380, LOC100836063
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 309aa    MW: 32981.6 Da    PI: 4.7256
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g29380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1985140256
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       r+++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  Bradi4g29380.1.p  85 RTKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGMAPRQVAVWFQNRRARWK 140
                       67789**************98**********************************9 PP
2HD-ZIP_I/II122.61.9e-3986177292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d++aL++a+d+l +++++L +++++Lr+++ 
  Bradi4g29380.1.p  86 TKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGMAPRQVAVWFQNRRARWKAKQLERDFDALRAAHDHLLASRDALLADNDSLRSQVI 177
                       69****************9999******************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1875144IPR009057Homeodomain-like
PROSITE profilePS5007117.60581142IPR001356Homeobox domain
SMARTSM003893.5E-1784146IPR001356Homeobox domain
PfamPF000466.1E-1785140IPR001356Homeobox domain
CDDcd000861.03E-1785143No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1986149IPR009057Homeodomain-like
PRINTSPR000313.8E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000313.8E-6122138IPR000047Helix-turn-helix motif
PfamPF021839.1E-15142184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MESGLLMFSS TAPCRAGGGQ MMLFGGSGSF LGGSPAVSGL EDGRRRKRPF LTTAPEDDLQ  60
MEEYENEMCG YGGLDLEEHA PGTGRTKRRL TAEQVRALER SFEEEKRKLE PERKSELARR  120
LGMAPRQVAV WFQNRRARWK AKQLERDFDA LRAAHDHLLA SRDALLADND SLRSQVISLT  180
EELQAKASSP TSEPEEHTTA SGMVHAGASA PAAQAAQPKE GCDAGAGAAG RVAAPAMGIA  240
GGSPESYSCF ADARSPPSCS DDDCGGAASS EGGCAFFLPD GAMIEAAVER ESEAEAATQL  300
NYWAWFWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g29380.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-103AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238133.10.0homeobox-leucine zipper protein HOX25
SwissprotA3BYC15e-73HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLI1IPU50.0I1IPU5_BRADI; Uncharacterized protein
STRINGBRADI4G29380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-24homeobox 1