PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g29990.1.p
Common NameBRADI_4g29990, LOC100832083
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 330aa    MW: 34618.6 Da    PI: 5.897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g29990.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13108154354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++ e++k+L
  Bradi4g29990.1.p 108 RSHSEAERRRRQRINAHLARLRSLLPNT-----TKTDKASLLAEVLEHVKEL 154
                       78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.602105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14108163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-11108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-13108157No hitNo description
Gene3DG3DSA:4.10.280.103.2E-14109162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.56E-5204255No hitNo description
Gene3DG3DSA:3.30.70.2603.1E-6204254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MWEGGVHGSH HEAARLLPPW FAEPAGGGGY GTCDVLGAGG QGGVFGFGFG AAAVAAQQQQ  60
QQRAAGEAGR SSGKAAAVSG LLGTLQAELG RMNSAGEMME AKALAASRSH SEAERRRRQR  120
INAHLARLRS LLPNTTKTDK ASLLAEVLEH VKELKRQTSA MTAAPPAAVE DDAGGPATML  180
PTEADELGVD AAQDGDGRLV VRASLCCEDR PDLIPDIVRA LAALRLRARR AEITTLGGRV  240
RSVLLITADE GDRQQEDDGE DDEDDDRECA ASHRRHECIA SVQEALRGVM DRRAACSNDN  300
TSSSGGGGGG SMIKRQRMIT YGAREQCSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g29990.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578101.10.0transcription factor bHLH30
TrEMBLI1IQ120.0I1IQ12_BRADI; Uncharacterized protein
STRINGBRADI4G29990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-48bHLH family protein