PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g30230.2.p

Common Name

BRADI_4g30230, LOC100836392

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 192aa MW: 21095.2 Da PI: 8.2928

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g30230.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	88.5	6.7e-28	114	171	1	60
ZF-HD_dimer 1 kekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +++vrY eC++NhAas+Gg+avDGC+ f+++ gee +aalkC ACgCHR+FHRr +++e Bradi4g30230.2.p 114 CCSVRYSECRRNHAASMGGYAVDGCRQFIAD-GEE-GSAALKCVACGCHRSFHRRVQVYE 171 5789************************8.666.5799*************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-23	96	175	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.5E-27	117	168	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.0E-21	118	166	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.466	119	167	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MDIMILCVCE MLEILALEID MAPTKTEYGM TLDPTQARAI CSLQPSSLSI GNNASLGKGR 60 EEGGYKYAMR WRGLVCAESK LAGSKEAEKR KRGHPMMKRL VVLRRCQPIL QFRCCSVRYS 120 ECRRNHAASM GGYAVDGCRQ FIADGEEGSA ALKCVACGCH RSFHRRVQVY EVAWDYESDK 180 SSSSSSSSGG D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g30230.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238164.1	1e-140	zinc-finger homeodomain protein 7 isoform X2
TrEMBL	A0A0Q3ERY6	1e-138	A0A0Q3ERY6_BRADI; Uncharacterized protein
STRING	BRADI4G30227.1	6e-85	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-23	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Bradi4g30230.2.p
Entrez Gene	100836392