PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g30350.2.p

Common Name

BRADI_4g30350

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 465aa MW: 46851.4 Da PI: 6.9303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g30350.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.2e-11	259	307	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a ++ +Ka++L + ++Y+k Lq Bradi4g30350.2.p 259 HSIAERLRRERIAERMKALQELVPNA--NKWMQTDKASMLDEIIDYVKFLQ 307 99*********************7..48888***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-16	252	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-13	252	311	No hit	No description
PROSITE profile	PS50888	16.463	254	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-15	258	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-8	259	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-12	260	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MQPTTRELQA MAAAAAGAGQ ISMGDLRNNG HAGPGGANGG GGGVHDDFLD QMFGSLPPSA 60 WHELATAAAA AKPPEDDSGM QQQQQFGGPY DESVMLASRL RQNQISGGGG PGSGAGGAAK 120 QMVLQQLADL RQAGHGHGHH MMLQGGTGRG DSGMILPLTL GNGGSGGDVQ ALLKAAANSA 180 GGEAGVFGGF AGSLQQQQQH FQPHPQQTAP MPNQTFGGGA ASGGGAQPQA GAGGGGGGGT 240 QAPPRQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKWMQT DKASMLDEII 300 DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD MSSEGRGGAG NGGGPAAESD SLTVTEQQVA 360 KLMEEDMGAA MQYLQGKGLC LMPVSLASAI SSATCQLRPP SGHAFPHHLN AMRQMHDAAV 420 PASPSMSVLT AQSAMVPGNN GGACAADGGA EASHPKDAAS VSKP*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MQPTTRELQA MAAAAAGAGQ ISMGDLRNNG HAGPGGANGG GGGVHDDFLD QMFGSLPPSA  60
WHELATAAAA AKPPEDDSGM QQQQQFGGPY DESVMLASRL RQNQISGGGG PGSGAGGAAK  120
QMVLQQLADL RQAGHGHGHH MMLQGGTGRG DSGMILPLTL GNGGSGGDVQ ALLKAAANSA  180
GGEAGVFGGF AGSLQQQQQH FQPHPQQTAP MPNQTFGGGA ASGGGAQPQA GAGGGGGGGT  240
QAPPRQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKWMQT DKASMLDEII  300
DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD MSSEGRGGAG NGGGPAAESD SLTVTEQQVA  360
KLMEEDMGAA MQYLQGKGLC LMPVSLASAI SSATCQLRPP SGHAFPHHLN AMRQMHDAAV  420
PASPSMSVLT AQSAMVPGNN GGACAADGGA EASHPKDAAS VSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	268	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g30350.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238169.1	0.0	transcription factor bHLH66 isoform X2
Swissprot	Q9ZUG9	6e-74	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0Q3HA43	0.0	A0A0Q3HA43_BRADI; Uncharacterized protein
STRING	BRADI4G30350.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-46	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Bradi4g30350.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]