PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g30350.8.p
Common NameBRADI_4g30350, LOC100826168
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 336aa    MW: 33873.8 Da    PI: 7.3955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g30350.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.1e-12259304555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Bradi4g30350.8.p 259 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 304
                       99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-17252314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-13252308No hitNo description
PROSITE profilePS5088817.39254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16256313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9259304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MQPTTRELQA MAAAAAGAGQ ISMGDLRNNG HAGPGGANGG GGGVHDDFLD QMFGSLPPSA  60
WHELATAAAA AKPPEDDSGM QQQQQFGGPY DESVMLASRL RQNQISGGGG PGSGAGGAAK  120
QMVLQQLADL RQAGHGHGHH MMLQGGTGRG DSGMILPLTL GNGGSGGDVQ ALLKAAANSA  180
GGEAGVFGGF AGSLQQQQQH FQPHPQQTAP MPNQTFGGGA ASGGGAQPQA GAGGGGGGGT  240
QAPPRQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV  300
KFLQLQVKVL SMSRLGGAAA VAPLVADMSS ECATA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g30350.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620765e-82BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279385e-82KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238169.10.0transcription factor bHLH66 isoform X2
TrEMBLA0A2K2CRB90.0A0A2K2CRB9_BRADI; Uncharacterized protein
STRINGBRADI4G30350.11e-153(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-21LJRHL1-like 1