PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g30920.1.p
Common NameBRADI_4g30920, LOC100838938
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 129aa    MW: 13932.3 Da    PI: 6.794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g30920.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-053254123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F ++  L  H++ H
  Bradi4g30920.1.p 32 FSCTYCDKKFYSSQALGGHQNAH 54
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.52E-72673No hitNo description
PROSITE profilePS5015711.3853259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MESNNGGEGE GDIDLNLSLQ PTLAPEEPLG YFSCTYCDKK FYSSQALGGH QNAHKFERSV  60
AKRTRELAAA RRQHNHAAGK GAAEEASRRG TDAGSNAEGS SSHRRVTLLP EAARRDHLIE  120
EIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g30920.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057475e-52AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149655e-52AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126175e-52CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8358195e-52CT835819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017B14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576560.16e-90zinc finger protein 11
TrEMBLI1IQB71e-88I1IQB7_BRADI; Uncharacterized protein
STRINGBRADI4G30920.12e-89(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-16zinc finger protein 2