PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g31785.1.p
Common NameBRADI_4g31785
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 171aa    MW: 18815.9 Da    PI: 10.0412
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g31785.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-14140342
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      i n+  r  tf +R   +lKKA+EL +LC+++ +vi++++
  Bradi4g31785.1.p  1 IPNDATRRATFKNRHDVLLKKASELAILCNIKSCVIVYGK 40
                      568999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.6E-12140IPR002100Transcription factor, MADS-box
CDDcd002662.32E-15172No hitNo description
PROSITE profilePS5006612.503139IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-4150IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-15184IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
IPNDATRRAT FKNRHDVLLK KASELAILCN IKSCVIVYGK GEAQPEVRSS VDEVVPILHR  60
YKAMPEIGRC KKTVTQEDFL RQRMDKLKKQ VHKAVQENRE RGTAFLVHKA MLGHLPRLEG  120
LTVEEVTNVG WMVQMKLKSL GDRIARSAGG TLATCSASSL CDVCATGTTA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489DKLKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g31785.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693109e-36KF469310.1 Brachypodium distachyon MADS-box transcription factor 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314493.15e-79agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3IWN51e-123A0A0Q3IWN5_BRADI; Uncharacterized protein (Fragment)
STRINGEMT028029e-53(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-21AGAMOUS-like 80