PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g32470.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 217aa    MW: 23594.7 Da    PI: 8.766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g32470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-133682354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r+h+e+Er+RR+riN  +++Lr+llP+a       ++Ka+ L ++v+++++L
  Bradi4g32470.1.p 36 RSHSEAERKRRQRINAHLATLRSLLPSA-----SQMDKAALLGEVVRHVREL 82
                      78*************************9.....68**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4593382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-133686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-143685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.39E-113684No hitNo description
PfamPF000101.6E-103682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-113988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.4E-5128188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYTMMVPTRN GEPEEMGMED EERAPATRSG GGGTSRSHSE AERKRRQRIN AHLATLRSLL  60
PSASQMDKAA LLGEVVRHVR ELRDRAPAGE AGFLPGESDD VGVEEEEQHW DARGSGEIRT  120
KRPVRAWVCC ADRPGLMSEL GRAVRSVSAR AVRAEIATVA GRTRSVLELD VGQAVGASRP  180
ALQAALRAVL LGRREELLAL ESGYKRQRFS ALISEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g32470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424386e-56BT042438.1 Zea mays full-length cDNA clone ZM_BFb0234B17 mRNA, complete cds.
GenBankEU9688086e-56EU968808.1 Zea mays clone 324264 DNA binding protein mRNA, complete cds.
GenBankKJ7279686e-56KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576618.21e-151transcription factor bHLH30
TrEMBLA0A2K2CRU11e-150A0A2K2CRU1_BRADI; Uncharacterized protein
STRINGBRADI4G32470.11e-148(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-16bHLH family protein