PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g32650.1.p
Common NameBRADI_4g32650, LOC100837512
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 339aa    MW: 36188.8 Da    PI: 6.7787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g32650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-14121172155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ +++Lr+l+P++    s++ + a+i+  A++++k+L+
  Bradi4g32650.1.p 121 QRMTHIAVERNRRKQMNDYLATLRSLMPPS---FSQRGDQASIVGGAINFVKELE 172
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.4E-14119176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-14119176No hitNo description
SuperFamilySSF474597.07E-17120187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.872120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-12121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALEAGVRSQ AAGLFGRCDM AGAAWNPFCG GYGMVDLDGG ECAWDAAACS STLLSQGLIH  60
EVSISIPDDA AAADPLLQGE CSGGRGKVNA DGAAPVTAAA SGRRKRRRTR AAKNWEEVES  120
QRMTHIAVER NRRKQMNDYL ATLRSLMPPS FSQRGDQASI VGGAINFVKE LEQLLQSLEA  180
HKRSSSRRQC TADLNDASPP PPFANFFTFP QYSMSAATVA PAAPPTTSDE GNVDASGSSK  240
PSAVADVEVT MVESHASLRV LARRRPRQLL RLIVGLQAHR LTVLHLNVTS AGHMALYSLN  300
LKVEDDCQLT SVDDIATAAH QIVEKIQQEQ HGCTPILE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103107RKRRR
2103108RKRRRT
3121132RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g32650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560411e-61BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds.
GenBankEU9519701e-61EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds.
GenBankKJ7280351e-61KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576627.30.0transcription factor bHLH94
SwissprotQ9C7T41e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLI1IQW90.0I1IQW9_BRADI; Uncharacterized protein
STRINGBRADI4G32650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]