PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g33000.1.p

Common Name

BRADI_4g33000, LOC100843805

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 204aa MW: 21835.1 Da PI: 8.3569

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g33000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.5e-36	28	86	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC+s++tkfCyynny+++qPr++C++CrryWtkGG+lrnvPvGg++r+n +ss Bradi4g33000.1.p 28 QAEACPRCESRDTKFCYYNNYNTTQPRHYCRSCRRYWTKGGSLRNVPVGGASRNNSSSS 86 6789**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.3E-31	29	84	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-21	29	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.587	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MQEPGRRTAP PFAGVDLRRP KGYQALAQAE ACPRCESRDT KFCYYNNYNT TQPRHYCRSC 60 RRYWTKGGSL RNVPVGGASR NNSSSSSSSS SSPPKRTKNS SSNSKRRRVV PEPEHEPVRT 120 DASAPAATTE AVRPVTTEDA APDDPAVETE PSVKLGVGGG LADAGGKEPS PFEWPSGCDD 180 LAISYWGTGV LADADPAMFL NLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	108	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00672	SELEX	Transfer from GRMZM2G009406	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g33000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354149	4e-72	AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20.
GenBank	AK360934	4e-72	AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17.
GenBank	AK377058	4e-72	AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576643.1	1e-148	dof zinc finger protein MNB1A
Swissprot	P38564	9e-45	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	I1IR10	1e-146	I1IR10_BRADI; Uncharacterized protein
STRING	BRADI4G33000.1	1e-147	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	5e-26	Dof family protein

Link Out ? help Back to Top
Phytozome	Bradi4g33000.1.p
Entrez Gene	100843805

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]