PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g33670.1.p
Common NameBRADI_4g33670, LOC100823417
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 411aa    MW: 42811 Da    PI: 9.1066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g33670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12340385655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR +i +++ +L+el+P+      k  + +++L +Av+YIk+Lq
  Bradi4g33670.1.p 340 SIAERVRRTKISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 385
                       689*********************6....4679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15337395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-12338389No hitNo description
Gene3DG3DSA:4.10.280.103.6E-15339393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-11340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9340385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MYGAALPKDL NLPIQLQQPA AGVRTPPQQP MSAPGLLRYR SAPSTLLGDD FLPAAAAGTG  60
PDDAVFARFL AGGHRPDIRD DNKPPRPVNS HFPEVAATAA SMAASQQQLM YQSQQQMAAM  120
EGTALYRTAS TGGGTDHAAS GGGNSLLLRQ SSSPADFLNH LNMDNGGYGN MLRAGMSGGG  180
GGFRNGEAPR LKGQLSFSSS RQGSMMSQIS EMVGEELGGG GGNSSADDEA GSNGGYGIPG  240
PGGYPMGGAA SSAGWDDPSP SPLLSVDSLQ SSGPAAAAKR RRDSPGNNGA SVPPIKHQLS  300
LPPSGKTSPE MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTKI SERIRKLQEL  360
VPNMEKQTNT SDMLDLAVDY IKELQMQVKV MNDGRASCTC SASRPKQFAG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g33670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3715041e-123AK371504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2135O23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238294.10.0transcription factor bHLH130 isoform X1
TrEMBLI1IR870.0I1IR87_BRADI; Uncharacterized protein
STRINGBRADI4G33670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-54bHLH family protein