PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g33820.1.p
Common NameBRADI_4g33820
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 614aa    MW: 64817 Da    PI: 10.3504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g33820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-092373446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                      W t E++ll++av ++G+ +W+++a +++         ++t+ +c++r++ 
  Bradi4g33820.1.p 23 WGTLEELLLACAVSRHGTASWDSVATEVQtrsplaarPRLTARSCRLRFHH 73
                      9999*********************************99********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00111977IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-42375IPR009057Homeodomain-like
PfamPF002491.3E-82372IPR001005SANT/Myb domain
PROSITE profilePS500906.1912375IPR017877Myb-like domain
CDDcd001671.10E-42374No hitNo description
Gene3DG3DSA:1.20.920.103.5E-7211312IPR001487Bromodomain
SMARTSM002970.002227339IPR001487Bromodomain
CDDcd043699.23E-8242307No hitNo description
PROSITE profilePS500149.007245307IPR001487Bromodomain
SuperFamilySSF473709.68E-9248318IPR001487Bromodomain
PfamPF004395.4E-7250317IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MADGSDGTDV SPEAAAAPAG EIWGTLEELL LACAVSRHGT ASWDSVATEV QTRSPLAARP  60
RLTARSCRLR FHHLHRRFSV AGAEVAGAEG EGEDPDASAA DGWLDELRRL RVAELRREVE  120
RCDLSIGTLQ AKVEQMKEER ERSLSGEAKK EEVTGEDNLS GEEAGRSCRE SNSTDLKRPK  180
NSGDQSGVKE DDATAKLEEF SGESMAASKE SSASQRRRRK ASAGDEESEE ASVQSQPLAA  240
LLDRVAARFG SVFERLQETQ ESESYRGTVR RHVDLETMRR KLDGPAAYTS SEFYRDLLLL  300
CANAAVYLPR HGTAEHAAAA VNALRLVSAQ VSATLREPKR DLQIGKSVAA ASGNNNNNLP  360
SAAADSRRAE AGGADVVGPL IEKTSKPLIF CRKRSSIAKA SAAAAAVARK EEEDAAKVEA  420
DKEEGSDGEK KAVAAVAATK DKAWGTRAKK TRGPNKNAGA AALSRKASKA AAAAEEAETK  480
ADKKKGDADS DGATAAGGLV AKKRNAVDFL KRLNQGASSS TKKKRGSPLV GRKRSAAAEA  540
QEEEQPKARR GPGKKGTGRG GSKSGAKAAG TKRSVGRPPQ KRGAAPATPP PSKRAKVNRS  600
ERTSSSSRRG GRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g33820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188003.10.0uncharacterized protein LOC109773708
TrEMBLI1IRA60.0I1IRA6_BRADI; Uncharacterized protein
STRINGBRADI4G33820.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-24DNA-binding bromodomain-containing protein