PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g34157.2.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 303aa MW: 33616.2 Da PI: 9.5816

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g34157.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.5	5.6e-32	23	105	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ ++el g+kktLvfykgrap+gek++Wvmheyrl Bradi4g34157.2.p 23 KAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFTGqppsTQELAGMKKTLVFYKGRAPRGEKSNWVMHEYRL 105 5677899***********************************9888888888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.275	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	9.81E-38	22	126	IPR003441	NAC domain
Pfam	PF02365	8.9E-16	22	105	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGSPGEYVCV TCVHKEKWVE EEKAKMGEKE WYFFSLRDRK YPTGVRTNRA TNAGYWKTTG 60 KDKEIFTGQP PSTQELAGMK KTLVFYKGRA PRGEKSNWVM HEYRLHSKPG SKSNKDEWVV 120 CRIFAKTPGV KKYPPNNAHT RPHHPYTLDM VPQLLPALMQ HDLFARGHHP YMTPADLVEL 180 SRFARGTPGL HPHIQPHPGY MNPSASFTLS NLNLNLGAPS PATGMPPQHA LHAMSMNQTN 240 ATNQGYQVTP AEHMAPGLGN YVIPPNGGDG GFGAGTTMGG TSIRYQNLDV DQLVEKCWPG 300 SY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-34	18	132	60	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-34	18	132	60	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-34	18	132	60	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-34	18	132	60	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-33	18	132	63	174	NAC domain-containing protein 19
3swm_B	1e-33	18	132	63	174	NAC domain-containing protein 19
3swm_C	1e-33	18	132	63	174	NAC domain-containing protein 19
3swm_D	1e-33	18	132	63	174	NAC domain-containing protein 19
3swp_A	1e-33	18	132	63	174	NAC domain-containing protein 19
3swp_B	1e-33	18	132	63	174	NAC domain-containing protein 19
3swp_C	1e-33	18	132	63	174	NAC domain-containing protein 19
3swp_D	1e-33	18	132	63	174	NAC domain-containing protein 19
4dul_A	9e-34	18	132	60	171	NAC domain-containing protein 19
4dul_B	9e-34	18	132	60	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g34157.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238320.1	0.0	NAC domain-containing protein 92
TrEMBL	A0A2K2CS81	0.0	A0A2K2CS81_BRADI; Uncharacterized protein
STRING	BRADI4G34157.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-60	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Bradi4g34157.2.p