PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g34800.1.p
Common NameBRADI_4g34800, LOC100821743
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 231aa    MW: 24830.1 Da    PI: 10.5665
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g34800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.71.3e-37171541128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       lppGfrFhPtdeelvv+yL++k+ +++l++  vi+ v    +++PwdLp    +e +  yfFs r+   atg+ ++r ++sgyWkatgk+k+v
  Bradi4g34800.1.p  17 LPPGFRFHPTDEELVVQYLRRKALARPLPA-AVIPVVhAAATLDPWDLPGV--SEGEAAYFFSLRQAP-ATGRGSRRRASSGYWKATGKEKPV 105
                       79***************************9.889999567788******43..356788****99876.577778888899************ PP

               NAM  93 lsk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++             ++ +vg+k+ L+f+ g+ +k+++t Wvmheyrl
  Bradi4g34800.1.p 106 FVQfppssgygggngkRQLVVGVKTALAFHLGNGKKPSRTGWVMHEYRL 154
                       **999999998876554555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-4413176IPR003441NAC domain
PROSITE profilePS5100544.01117176IPR003441NAC domain
PfamPF023651.1E-2418154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MERRPVAAGD AARPQQLPPG FRFHPTDEEL VVQYLRRKAL ARPLPAAVIP VVHAAATLDP  60
WDLPGVSEGE AAYFFSLRQA PATGRGSRRR ASSGYWKATG KEKPVFVQFP PSSGYGGGNG  120
KRQLVVGVKT ALAFHLGNGK KPSRTGWVMH EYRLAAAAAE QKKASGEWVV CRVSLKSGAR  180
RPAGAEDRAP HVVHREEPGR RQPSPSLSPS SSCVTDTCQV SDQEEISSSQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-291717917168NO APICAL MERISTEM PROTEIN
1ut4_B8e-291717917168NO APICAL MERISTEM PROTEIN
1ut7_A8e-291717917168NO APICAL MERISTEM PROTEIN
1ut7_B8e-291717917168NO APICAL MERISTEM PROTEIN
3swm_A9e-291717920171NAC domain-containing protein 19
3swm_B9e-291717920171NAC domain-containing protein 19
3swm_C9e-291717920171NAC domain-containing protein 19
3swm_D9e-291717920171NAC domain-containing protein 19
3swp_A9e-291717920171NAC domain-containing protein 19
3swp_B9e-291717920171NAC domain-containing protein 19
3swp_C9e-291717920171NAC domain-containing protein 19
3swp_D9e-291717920171NAC domain-containing protein 19
4dul_A8e-291717917168NAC domain-containing protein 19
4dul_B8e-291717917168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g34800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576724.11e-167NAC domain-containing protein 41
SwissprotO227982e-44NAC41_ARATH; NAC domain-containing protein 41
TrEMBLI1IRM91e-165I1IRM9_BRADI; Uncharacterized protein
STRINGBRADI4G34800.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Representative plantOGRP1312545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.24e-29NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]