PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g34870.3.p
Common NameBRADI_4g34870
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 301aa    MW: 33080.1 Da    PI: 6.5095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g34870.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09130177455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+  Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Bradi4g34870.3.p 130 SHSLSERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 177
                       799***********************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.21E-11124181No hitNo description
SuperFamilySSF474593.4E-17124193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16126190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FLFCHGHVVA ASANPEDAAS LETSSGVLDT PPMATSSVEK  60
KRRPCREEHT VSLKSAHSPK SLHCLKNNQE PKENTRKRGG KKQSKEVDEE EEEPKGYIHV  120
RARRGQATDS HSLSERVRRE RISERMRMLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV  180
EFLSMRIASL SPVLYGFGMD RDVSFSDQLQ KIEGICHEAA AMPSDPAMNR SSTSPAPSQA  240
IMDTDTSSSS PHYSLQGTNG GMSLSQDNGS SIGYMMQTVG EPREELFNQV VFSNYMCSFQ  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g34870.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654681e-156AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238344.20.0transcription factor BEE 1 isoform X1
RefseqXP_010238345.20.0transcription factor BEE 1 isoform X1
TrEMBLA0A0Q3PNC30.0A0A0Q3PNC3_BRADI; Uncharacterized protein
STRINGBRADI4G34870.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-36bHLH family protein