PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g35520.1.p

Common Name

BRADI_4g35520, LOC100829942

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 306aa MW: 31636 Da PI: 4.9483

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g35520.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.4	4.4e-33	30	107	5	83
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 +r+ ++hTkv+gR+RR+R+ a+caar+ L++eLG+++d++ti WLlqq++pai ++tgt++ +a ++ +++ + Bradi4g35520.1.p 30 PQRNRDRHTKVEGRGRRIRMAAPCAARVARLTRELGHKSDGETIRWLLQQSEPAIVAATGTGTVPAIAT-TVDGVLRIP 107 5799*********************************************************88888444.222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	24.864	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-26	33	118	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAPTDPTVAN GSIVPKPEPE FLGGLAVAVP QRNRDRHTKV EGRGRRIRMA APCAARVARL 60 TRELGHKSDG ETIRWLLQQS EPAIVAATGT GTVPAIATTV DGVLRIPTES PSSAPGGDGE 120 ESGPKRRRKL QPTRAPAGAA QLLTAPPAAY YSAATDPLLQ GSGGGAISMS SGLATVSAPA 180 AGAIPFIAIP ATGSSAAGDG NQMVPSAAVW MVPQPANVVG AANQPTHYWA FQTNSELVNF 240 AGAQSFNVAN YQHNQACYSP MHFVTGGESQ DQQTDGQRVN TEDDQPQGLQ DDYDGEALTD 300 SSSEE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	129	PKRRRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g35520.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576745.1	0.0	transcription factor PCF2
Swissprot	A2YXQ1	1e-102	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-102	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	I1IRY8	0.0	I1IRY8_BRADI; Uncharacterized protein
STRING	BRADI4G35520.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67
Representative plant	OGRP3178	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	7e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	Bradi4g35520.1.p
Entrez Gene	100829942

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]