PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35580.1.p
Common NameBRADI_4g35580, CBF2
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 259aa    MW: 27629 Da    PI: 6.3007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35580.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.3e-174395155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr++   grWv+e+r+p ++g  +r +lg++ ta+ Aa+a++aa+++l+g
  Bradi4g35580.1.p 43 PVYRGVRRRGAAGRWVCEVRVPGKRG--QRLWLGTHLTADSAARAHDAAMLALRG 95
                      68*******************95544..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-124395IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-144499IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-2344110IPR001471AP2/ERF domain
SMARTSM003801.0E-1344114IPR001471AP2/ERF domain
PROSITE profilePS5103219.37544108IPR001471AP2/ERF domain
CDDcd000181.13E-1745110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDAASSPSSS SSHEQHGAAC PQPAPPRPKR PAGRTKFKET RHPVYRGVRR RGAAGRWVCE  60
VRVPGKRGQR LWLGTHLTAD SAARAHDAAM LALRGPWCSA AACLLNFTDS AWLLAVPHVL  120
PNDFSAVRRA ALAALADFQR RDQVARGDAT VPVVDEVASS ASALPSYMDE ASSWASSFQP  180
SEIGDFDVPV VVGSGMFELD MSGEMDLGAC YADLAEGLLM EPPQTTPDTE ACWGSGYYYD  240
GGADAALWHY GTKHSILL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35580.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1804700.0JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576748.10.0dehydration-responsive element-binding protein 1H
SwissprotA2Z3882e-55DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0902e-55DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLH9C1H10.0H9C1H1_BRADI; CBF2
STRINGBRADI4G35580.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-12C-repeat-binding factor 4
Publications ? help Back to Top
  1. Li C, et al.
    Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses.
    BMC Plant Biol., 2012. 12: p. 65
    [PMID:22569006]