PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g35642.1.p

Common Name

BRADI_4g35580, CBF2

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ERF

Protein Properties

Length: 255aa MW: 27240.6 Da PI: 6.5036

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g35642.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54	4.2e-17	39	91	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p ++g +r +lg++ ta+ Aa+a++aa+++l+g Bradi4g35642.1.p 39 PVYRGVRRRGAAGRWVCEVRVPGKRG--QRLWLGTHLTADSAARAHDAAMLALRG 91 68*****************95544..***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.2E-12	39	91	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-23	40	106	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-13	40	110	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.375	40	104	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.48E-14	40	95	IPR016177	DNA-binding domain
CDD	cd00018	9.59E-18	41	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
SSPSSSSSHE QHGAACPQPA PPRPKRPAGR TKFKETRHPV YRGVRRRGAA GRWVCEVRVP 60 GKRGQRLWLG THLTADSAAR AHDAAMLALR GPWCSAAACL LNFTDSAWLL AVPHVLPNDF 120 SAVRRAALAA LADFQRRDQV ARGDATVPVV DEVASSASAL PSYMDEASSW ASSFQPSEIG 180 DFDVPVVVGS GMFELDMSGE MDLGACYADL AEGLLMEPPQ TTPDTEACWG SGYYYDGGAD 240 AALWHYGTKH SILL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g35642.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ180470	0.0	JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds.
GenBank	JQ180471	0.0	JQ180471.1 Brachypodium distachyon CBF5 (CBF5) gene, complete cds; CBF6 pseudogene and retrotransposon, complete sequence; and CBF7 (CBF7) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576748.1	0.0	dehydration-responsive element-binding protein 1H
Swissprot	A2Z388	2e-55	DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
Swissprot	Q0J090	2e-55	DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBL	A0A2K2CSI0	0.0	A0A2K2CSI0_BRADI; Uncharacterized protein (Fragment)
TrEMBL	H9C1H1	0.0	H9C1H1_BRADI; CBF2
STRING	BRADI4G35580.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261
Representative plant	OGRP6456	5	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51990.1	4e-12	C-repeat-binding factor 4

Link Out ? help Back to Top
Phytozome	Bradi4g35642.1.p
Entrez Gene	100830861

Publications ? help Back to Top
Li C, et al. Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses. BMC Plant Biol., 2012. 12: p. 65 [PMID:22569006]