PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35655.1.p
Common NameBRADI_4g35655, LOC100831768
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 228aa    MW: 23820.5 Da    PI: 10.6151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35655.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182169355
               AP2  3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      + GVr+++ +grWvAeI+d      +r r +lg+f+tae+Aa+a+++a+++l+g
  Bradi4g35655.1.p 21 FLGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEDAARAYDEAARALRG 69
                      67******.7*********....4456*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-272077IPR001471AP2/ERF domain
CDDcd000186.30E-262078No hitNo description
SMARTSM003802.2E-332083IPR001471AP2/ERF domain
PROSITE profilePS5103220.1522077IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-192178IPR016177DNA-binding domain
PRINTSPR003673.6E-82132IPR001471AP2/ERF domain
PfamPF008478.1E-132369IPR001471AP2/ERF domain
PRINTSPR003673.6E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAEGSGRST TATAQCRGRR FLGVRQRPSG RWVAEIKDSA QRVRLWLGTF DTAEDAARAY  60
DEAARALRGD NTRTNFAARH NGASSSPARA RVSKNLQHVM ARAAAAGRSS LATACGDQQF  120
ALAAVFRHWQ APPEQQLTPS ARGGETVQHV ANAVQPSFVV PRRTEAPPPV TLGAGDVWGA  180
DTGVLELAAG SGGETGGEKS FKVSSSLIVP SKFGAAAATE SFGLEEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-141681167ATERF1
3gcc_A1e-141681167ATERF1
5wx9_A2e-1420841479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35655.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239429.11e-162dehydration-responsive element-binding protein 1C
TrEMBLA0A0Q3IYC41e-161A0A0Q3IYC4_BRADI; Uncharacterized protein
STRINGSi032213m1e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11