PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35950.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 184aa    MW: 20772 Da    PI: 7.3879
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35950.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.6e-08333434
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                      ++C+ +e+  + lfC  ++  lC++C ++ H
  Bradi4g35950.3.p  3 TICDVCESAVAVLFCAADEAALCRSCDEKVH 33
                      68**************************998 PP
2zf-B_box25.42.9e-085291237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      +  +C+ +e+ ++ ++C  +++ lC +C ++ H g    H
  Bradi4g35950.3.p 52 KLVRCDICENSPAFFYCDIDGTSLCLSCDMAVHVGgkrtH 91
                      6789****************************96655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003366.5E-9147IPR000315B-box-type zinc finger
CDDcd000213.30E-7345No hitNo description
PfamPF006434.5E-6334IPR000315B-box-type zinc finger
SMARTSM003367.0E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.6555196IPR000315B-box-type zinc finger
PfamPF006432.3E-65291IPR000315B-box-type zinc finger
CDDcd000212.27E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRTICDVCES AVAVLFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP NKLVRCDICE  60
NSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR VEFPGDKPGN MDDVPMQQIE  120
SENQRDQNKA PHSVPKEQML VIMGKVRVHR LRQLIIVPTT MTLQEWCQHA IWNETPTNKH  180
WNI*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35950.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741331e-169AK374133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578491.11e-100B-box zinc finger protein 18
SwissprotC0SVM57e-63BBX19_ARATH; B-box zinc finger protein 19
TrEMBLI1IS401e-135I1IS40_BRADI; Uncharacterized protein
STRINGBRADI4G35950.11e-100(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-65DBB family protein