PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37730.1.p
Common NameBRADI_4g37730, LOC100839457
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 345aa    MW: 36978.6 Da    PI: 7.908
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37730.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.32.9e-1130114172
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrt 72 
                       +W+++ +  L+ea++ ++   +r+klk  +W ++++ +               +   ++p+qCk+k e+++kry+++ + + +  
  Bradi4g37730.1.p  30 EWSESGISRLLEAYEAKWLLRNRAKLKWSDWVDIANDVsvhcssesaaagkPGGSSAKTPNQCKNKVESMKKRYRAESAAAARSG 114
                       5************************************************955555589*****************9988776643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1328133No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDGLTDADVA PLAAAAAAAP QQQQQQKRDE WSESGISRLL EAYEAKWLLR NRAKLKWSDW  60
VDIANDVSVH CSSESAAAGK PGGSSAKTPN QCKNKVESMK KRYRAESAAA ARSGPGAAAN  120
AAGPSWRFFG RMDGLLKGPG AGSSGQVQAE LSNGVDLRVP PAKAEPEVEV EGGLLRQLPD  180
AGPSALSELV NADGNGFATE RAEKVDCSMQ KDSRAVDSDA NVSSPRSKEA KEDVEEVGKV  240
WDMPKKRKSS EFDIGKSIEL LASSFLKIEQ ARMEMYRETE KMRVEAEIKK GEMELKRTEI  300
MAKTQLQIAK LFAKRLKECS RTGGSSSVAA DVDTLTKKGE NGSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37730.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578632.10.0trihelix transcription factor ASIL1
TrEMBLI1ISR30.0I1ISR3_BRADI; Uncharacterized protein
STRINGBRADI4G37730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-43sequence-specific DNA binding transcription factors