PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37760.1.p
Common NameBRADI_4g37760, LOC104585144
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 153aa    MW: 16499.2 Da    PI: 8.2648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-054466123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C++ Fs++  L  H++ H
  Bradi4g37760.1.p 44 FSCNYCHRKFSSSQALGGHQNAH 66
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-63369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-64171No hitNo description
PfamPF139121.4E-54466IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4894471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MERRHQLQYG GVSLDLRLEP TYRPGPAASP AADHGRDHQR EEAFSCNYCH RKFSSSQALG  60
GHQNAHKLER TLAKRNNSRL PHLAAEAAPA SSSSSSRPAA AVVDQSWLHG SGELWAYRAS  120
AAETVVSGWA MTTAAGRNYG EEAAEMDLSL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375923e-38AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBankAP0050903e-38AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBankAP0149653e-38AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-38CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239446.11e-108zinc finger protein 2
TrEMBLI1ISR61e-107I1ISR6_BRADI; Uncharacterized protein
STRINGBRADI4G37760.11e-107(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.12e-16zinc finger protein 7