PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37946.2.p
Common NameBRADI_4g37946
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 652aa    MW: 73154.7 Da    PI: 8.6765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37946.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-1432122399
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       k +t+ + + ++ +v+p   ++++ggk   s t++le ++g+  +v +   k  +r+vl++GW+ Fv+ n+++e+ +++F+ +grs+   +v+
  Bradi4g37946.2.p  32 KFMTQMHGNFKDSMVIPEWIVNHFGGK--ISGTIKLEAPNGQIHDVGV--AKEMNRTVLQSGWEAFVDVNQIQENFSLMFRWIGRSCL--KVT 118
                       6788888999999****9999777888..6779***************..**********************************9999..999 PP

                       EE-S CS
                B3  96 vfrk 99 
                       +f++
  Bradi4g37946.2.p 119 IFDA 122
                       9986 PP
2B330.75.6e-102413211193
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                        k+ +l + k++a+++   k++s+tl+l  e+++ W+ ++++r +++++ l    ++Fv++n L+egD ++F+ +   + ++++
  Bradi4g37946.2.p 241 KKTPMLAITKDYARAYFPHKNQSVTLKLP-ENSKNWRCRFCVRPGGRGHHLY--LSKFVHDNLLREGDLCLFQPMTGvKATKFT 321
                       5667899*********7666787666643.688*********9999999999..99*****************55332444333 PP
3B341.81.9e-13396488595
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..E CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelv 93 
                       l++s ++ +++lv++k +a++h  +  es+t+tl+ + g ++W  ++ +r++ ++yvl + W +F+++n+L+  D ++++   +g+ ++f+ +
  Bradi4g37946.2.p 396 LKSSVNGPHACLVISKGYATAHFPS--ESQTITLQLPGGkKKWHPRFYIRRGNSAYVLYGQWIDFARDNRLCKEDLCLLQpiIKGKgRRFTVM 486
                       45666778899***********744..6789*****99989******77999999*************************5333444555555 PP

                       EE CS
                B3  94 vk 95 
                       v+
  Bradi4g37946.2.p 487 VH 488
                       55 PP
4B337.25.4e-125756472299
                       H.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  22 faeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +a++h  +gk   +k    +  ++++W+vk+   +k+  ++ ++GW+eF  +n+L++gD ++F+l + ++  + v+++r+
  Bradi4g37946.2.p 575 HADRHlpDGK---EKVALCQAGWNKEWRVKM--HNKR--MLPGGGWREFTIDNRLQDGDLCLFELLKIEGLAMAVHIIRT 647
                       6666644222...33344456899*******..5554..7899*********************9988999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.98230123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-1731124IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-1731121No hitNo description
PfamPF023621.8E-1232122IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-1633123IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-433123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-10229313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-10230314IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.71231330IPR003340B3 DNA binding domain
SMARTSM010190.0018235330IPR003340B3 DNA binding domain
PfamPF023622.0E-8240325IPR003340B3 DNA binding domain
CDDcd100172.33E-8245327No hitNo description
Gene3DG3DSA:2.40.330.101.4E-14384487IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16385489IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-15389488No hitNo description
PROSITE profilePS508639.671392493IPR003340B3 DNA binding domain
SMARTSM010190.0032392493IPR003340B3 DNA binding domain
PfamPF023626.7E-11396489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-14547647IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-12548647IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-6559648IPR003340B3 DNA binding domain
CDDcd100172.59E-11573646No hitNo description
PfamPF023621.1E-9574647IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884595648IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MQQVERSKQC CKKSKAPVEM SNPCECCKSK VKFMTQMHGN FKDSMVIPEW IVNHFGGKIS  60
GTIKLEAPNG QIHDVGVAKE MNRTVLQSGW EAFVDVNQIQ ENFSLMFRWI GRSCLKVTIF  120
DANGEERISC CAGMKHPTYV EKASTNCADI SSNSHDGTAQ SSDSDGHCRE QGNKPAVESS  180
CDEFSDYSPS ESESMESDDL RLSKDYVLSG RCYLTEEQED EINAFVRKIK PEIPLLVVMM  240
KKTPMLAITK DYARAYFPHK NQSVTLKLPE NSKNWRCRFC VRPGGRGHHL YLSKFVHDNL  300
LREGDLCLFQ PMTGVKATKF TFMFHLLGRA GKADIDSNHG SFKKKKKFLT DHQETSSKIH  360
YILSGRCQLD KEDEVGIEAL IAELQPEIPL LVVRMLKSSV NGPHACLVIS KGYATAHFPS  420
ESQTITLQLP GGKKKWHPRF YIRRGNSAYV LYGQWIDFAR DNRLCKEDLC LLQPIIKGKG  480
RRFTVMVHLL PKARSTSRSK GRDGVLGLNS GGTETSDDSN ISGYVLLGSS ARLTSAQESI  540
VAEKVKSIQS QAPIYVAAID KSNYSNSLDF GTKGHADRHL PDGKEKVALC QAGWNKEWRV  600
KMHNKRMLPG GGWREFTIDN RLQDGDLCLF ELLKIEGLAM AVHIIRTEQY S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37946.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318791.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A2K2CT070.0A0A2K2CT07_BRADI; Uncharacterized protein
STRINGEMT181700.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1136337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-11B3 family protein