PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37946.3.p
Common NameBRADI_4g37946
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 647aa    MW: 72571.2 Da    PI: 8.5424
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37946.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-1427117399
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       k +t+ + + ++ +v+p   ++++ggk   s t++le ++g+  +v +   k  +r+vl++GW+ Fv+ n+++e+ +++F+ +grs+   +v+
  Bradi4g37946.3.p  27 KFMTQMHGNFKDSMVIPEWIVNHFGGK--ISGTIKLEAPNGQIHDVGV--AKEMNRTVLQSGWEAFVDVNQIQENFSLMFRWIGRSCL--KVT 113
                       6788888999999****9999777888..6779***************..**********************************9999..999 PP

                       EE-S CS
                B3  96 vfrk 99 
                       +f++
  Bradi4g37946.3.p 114 IFDA 117
                       9986 PP
2B330.75.5e-102363161193
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                        k+ +l + k++a+++   k++s+tl+l  e+++ W+ ++++r +++++ l    ++Fv++n L+egD ++F+ +   + ++++
  Bradi4g37946.3.p 236 KKTPMLAITKDYARAYFPHKNQSVTLKLP-ENSKNWRCRFCVRPGGRGHHLY--LSKFVHDNLLREGDLCLFQPMTGvKATKFT 316
                       5667899*********7666787666643.688*********9999999999..99*****************55332444333 PP
3B341.81.9e-13391483595
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..E CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelv 93 
                       l++s ++ +++lv++k +a++h  +  es+t+tl+ + g ++W  ++ +r++ ++yvl + W +F+++n+L+  D ++++   +g+ ++f+ +
  Bradi4g37946.3.p 391 LKSSVNGPHACLVISKGYATAHFPS--ESQTITLQLPGGkKKWHPRFYIRRGNSAYVLYGQWIDFARDNRLCKEDLCLLQpiIKGKgRRFTVM 481
                       45666778899***********744..6789*****99989******77999999*************************5333444555555 PP

                       EE CS
                B3  94 vk 95 
                       v+
  Bradi4g37946.3.p 482 VH 483
                       55 PP
4B337.25.3e-125706422299
                       H.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  22 faeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +a++h  +gk   +k    +  ++++W+vk+   +k+  ++ ++GW+eF  +n+L++gD ++F+l + ++  + v+++r+
  Bradi4g37946.3.p 570 HADRHlpDGK---EKVALCQAGWNKEWRVKM--HNKR--MLPGGGWREFTIDNRLQDGDLCLFELLKIEGLAMAVHIIRT 642
                       6666644222...33344456899*******..5554..7899*********************9988999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.98225118IPR003340B3 DNA binding domain
CDDcd100174.49E-1726116No hitNo description
Gene3DG3DSA:2.40.330.108.4E-1726119IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1227117IPR003340B3 DNA binding domain
SMARTSM010191.0E-428118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-1628118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-10224308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-10225309IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.71226325IPR003340B3 DNA binding domain
SMARTSM010190.0018230325IPR003340B3 DNA binding domain
PfamPF023622.0E-8235320IPR003340B3 DNA binding domain
CDDcd100172.65E-8240322No hitNo description
Gene3DG3DSA:2.40.330.101.4E-14379482IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-16380484IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-15384483No hitNo description
SMARTSM010190.0032387488IPR003340B3 DNA binding domain
PROSITE profilePS508639.671387488IPR003340B3 DNA binding domain
PfamPF023626.6E-11391484IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-15542642IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-12543642IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-6554643IPR003340B3 DNA binding domain
CDDcd100173.03E-11568641No hitNo description
PfamPF023621.1E-9569642IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884590643IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MRLIFLCTCK APVEMSNPCE CCKSKVKFMT QMHGNFKDSM VIPEWIVNHF GGKISGTIKL  60
EAPNGQIHDV GVAKEMNRTV LQSGWEAFVD VNQIQENFSL MFRWIGRSCL KVTIFDANGE  120
ERISCCAGMK HPTYVEKAST NCADISSNSH DGTAQSSDSD GHCREQGNKP AVESSCDEFS  180
DYSPSESESM ESDDLRLSKD YVLSGRCYLT EEQEDEINAF VRKIKPEIPL LVVMMKKTPM  240
LAITKDYARA YFPHKNQSVT LKLPENSKNW RCRFCVRPGG RGHHLYLSKF VHDNLLREGD  300
LCLFQPMTGV KATKFTFMFH LLGRAGKADI DSNHGSFKKK KKFLTDHQET SSKIHYILSG  360
RCQLDKEDEV GIEALIAELQ PEIPLLVVRM LKSSVNGPHA CLVISKGYAT AHFPSESQTI  420
TLQLPGGKKK WHPRFYIRRG NSAYVLYGQW IDFARDNRLC KEDLCLLQPI IKGKGRRFTV  480
MVHLLPKARS TSRSKGRDGV LGLNSGGTET SDDSNISGYV LLGSSARLTS AQESIVAEKV  540
KSIQSQAPIY VAAIDKSNYS NSLDFGTKGH ADRHLPDGKE KVALCQAGWN KEWRVKMHNK  600
RMLPGGGWRE FTIDNRLQDG DLCLFELLKI EGLAMAVHII RTEQYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37946.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318791.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A2K2CT080.0A0A2K2CT08_BRADI; Uncharacterized protein
STRINGEMT181700.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-11B3 family protein