PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g38527.1.p
Common NameBRADI_4g38527, LOC104584736
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 179aa    MW: 19095.4 Da    PI: 4.6219
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g38527.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB45.71.6e-14701412596
             NF-YB  25 akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                         + kda     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f ++vepl++ l+++r+ +++
  Bradi4g38527.1.p  70 VIVNKDAMAAFAESARIFIHYLSATANDVCKEAKRQTINAEDVFKALDEIEFAEFVEPLRTSLEEFRNKNAA 141
                       35789**************************************************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-3137177IPR009072Histone-fold
PfamPF008081.4E-843116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.14E-2544175IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAGVTKEPQA ASQGEGSKSP APAPAPAPAP AAAAAMTEAE VEELPKTIVR RLVKDKLAQI  60
AGGDEGGADV IVNKDAMAAF AESARIFIHY LSATANDVCK EAKRQTINAE DVFKALDEIE  120
FAEFVEPLRT SLEEFRNKNA ARKPPTVKKP AEKKRKLDKE VPPEDQNNAA DDAKEDED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g38527.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238535.11e-123DNA polymerase epsilon subunit 3
TrEMBLI1IT161e-122I1IT16_BRADI; Uncharacterized protein
STRINGBRADI4G38527.11e-123(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-36nuclear factor Y, subunit B11