PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g38630.1.p
Common NameBRADI_4g38630, LOC100824427
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 691aa    MW: 76329.8 Da    PI: 5.0394
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g38630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822119.25.7e-3754144896
            DUF822   8 twkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslqs 96 
                         +E+E++k+RERrRRai+ +i+aGLR++Gny l++raD+neV++AL+r+AGwvv +DGtt++ +s+ +  + a  +  sa   p ss + 
  Bradi4g38630.1.p  54 AREEKERTKLRERRRRAITGRILAGLRRHGNYSLRVRADINEVVAALARDAGWVVLPDGTTFPSSSHSQtpRPAMLVPVSAAPPPISSASA 144
                       5679***********************************************************7766654345555566666666666552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-3454191IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.48E-191247685IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.1E-208250684IPR013781Glycoside hydrolase, catalytic domain
PfamPF013737.3E-116256675IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-76287301IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-76308326IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-76330351IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060334342IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008426.1E-8413422IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.3E-76423445IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-76496515IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-76530546IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-76547558IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-76565588IPR001554Glycoside hydrolase, family 14
PRINTSPR008426.1E-8568578IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.3E-76605627IPR001554Glycoside hydrolase, family 14
PRINTSPR008426.1E-8656670IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008426.1E-8671685IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MLRLDPGGGE DEAMGIKEED DDEDEDDEQE EDYLVMAGDE QAEEQQQRRR GGRAREEKER  60
TKLRERRRRA ITGRILAGLR RHGNYSLRVR ADINEVVAAL ARDAGWVVLP DGTTFPSSSH  120
SQTPRPAMLV PVSAAPPPIS SASASALAPP LRGIVSSPLA ARPISRRAAA VAGPSYSALR  180
SCSSLSSPPR AARAVPEDDA SPLLAVPVPD DHGMGAQDGD AGKQAGAACA TTAVVAVAPP  240
RPPERDFAGT PYVPVYVMLP LGVVNVSGEV ADADELVGQL RVLKAAGVDG VMVDCWWGNV  300
EAQRPQEYNW TGYKRLFQMI RELKLKLQVV MSFHECGGNV GDDVSIPLPE WVIEIGRSNP  360
DIYFTDREGR RNTECLSWGI DKERVLQGRT AVEVYFDFMR SFRVAFDEYF EDGIISEIEV  420
GLGACGELRY PSYAANHGWK YPGIGEFQCY DRYLQKNLRK AAEARGHTIW ARSPDNAGHY  480
NSEPNSTGFF CDGGDYDSYY GRFFLNWYSQ VLLDHADRVL MLARLAFEGS AIAVKVSGIH  540
WWYKTASHAA ELTAGFYNPC NRDGYAPIVT VLKKHGAALN FTCVELRTMA QHEVFPEALA  600
DPEGLVWQVL NAAWDAGIPV ASENALPCYD RDGFNKTLEN AKPRNDPDGR HLFGFTYLRL  660
CSVLFEKPNF MEFERFVKRM HGEAVLDLQA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-16325268311444BETA-AMYLASE
1bya_A1e-16325268311444BETA-AMYLASE
1byb_A1e-16325268311444BETA-AMYLASE
1byc_A1e-16325268311444BETA-AMYLASE
1byd_A1e-16325268311444BETA-AMYLASE
1q6c_A1e-16325268311444beta-amylase
1wdp_A1e-16325268311444Beta-amylase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14768RRRGGRAREEKERTKLRERRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g38630.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576871.10.0beta-amylase 2, chloroplastic
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0Q3HDR70.0A0A0Q3HDR7_BRADI; Beta-amylase
STRINGBRADI4G38630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Representative plantOGRP4345912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]