PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g38941.1.p
Common NameBRADI_4g38941, LOC100831470
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 130aa    MW: 14532.7 Da    PI: 6.8102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g38941.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-201263155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr+++ +g+++AeIrd s    +  r++lg+f+taeeAa+a+++ + +++g
  Bradi4g38941.1.p 12 TKYRGVRRRP-WGKFAAEIRDSSR---HgVRVWLGTFDTAEEAARAYDRSAYSMRG 63
                      69********.**********432...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.38E-281273No hitNo description
PfamPF008471.9E-141263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-321373IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-231372IPR016177DNA-binding domain
SMARTSM003806.3E-341379IPR001471AP2/ERF domain
PROSITE profilePS5103224.251371IPR001471AP2/ERF domain
PRINTSPR003675.2E-121425IPR001471AP2/ERF domain
PRINTSPR003675.2E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEGGEGSAGE PTKYRGVRRR PWGKFAAEIR DSSRHGVRVW LGTFDTAEEA ARAYDRSAYS  60
MRGRNAVLNF PDQAHVYEAE ARSGRSSSSS SSSNQQQQQQ SQVIEFEYLD DEVLQGMLDD  120
HDKSGRRNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-3921133114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBMTransfer from AT5G43410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g38941.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576892.16e-91ethylene-responsive transcription factor ERF096
SwissprotQ9LSX05e-39ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A0Q3HTL71e-89A0A0Q3HTL7_BRADI; Uncharacterized protein
STRINGTraes_4DS_AB2BEFAB3.16e-61(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-38ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]