PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g39137.3.p
Common NameBRADI_4g39137, LOC100833617
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 540aa    MW: 58675.6 Da    PI: 6.5516
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g39137.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-0997120326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       ++ C ++ r+GtC++G +CkF+H+
  Bradi4g39137.3.p  97 EPDCTYYIRFGTCRFGMKCKFNHP 120
                       689********************8 PP
2zf-CCCH27.36.3e-09236259326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       +e+C+++  +G Ck+G +Ck+ H+
  Bradi4g39137.3.p 236 QEECKYYKTFGGCKFGKSCKYLHP 259
                       699********************8 PP
3zf-CCCH30.85.1e-10285307426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++++rtG C+y  +C+F+H+
  Bradi4g39137.3.p 285 KECQYYMRTGSCRYATNCRFHHP 307
                       79********************9 PP
4zf-CCCH31.14e-10437463127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++f ++G+Ck+G +Ck++H++
  Bradi4g39137.3.p 437 PGQPECQHFVKSGYCKFGVKCKYHHPR 463
                       5789*********************96 PP
5zf-CCCH25.52.2e-08489514227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C ++ r+G CkyG+ C ++H++
  Bradi4g39137.3.p 489 DQPVCTYYGRYGVCKYGPACLYNHPF 514
                       6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.08994122IPR000571Zinc finger, CCCH-type
SMARTSM003560.02294121IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-697120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-599122IPR000571Zinc finger, CCCH-type
SMARTSM003560.0064233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31233261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5237261IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6237259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4239258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342281309IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-5281308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6284308IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6285307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4287306IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5436463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347436464IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7438463IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5440464IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4442463IPR000571Zinc finger, CCCH-type
SMARTSM003560.004487514IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713487515IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5488515IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6489514IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MADTDANPAP ESDPIASIPP SSPPAGDAAA AIEAQFADLA VTVELPASGW EDDDGPAAVP  60
EIATAGDEVT GDKVPAPAPT KAAVSDSGPR FPRRPAEPDC TYYIRFGTCR FGMKCKFNHP  120
ARRKKNRAKG SGSSGSSNKA SSPPDDDQTP KEEYEEDLVP DIAAEVDSLG FVNKGSKSSN  180
SGDLMKTSYE KGQMEPKELK IDATEKGTYP KKFDETDDQK VAKEKRRDTV SEGSAQEECK  240
YYKTFGGCKF GKSCKYLHPG GKERKAEVEE VELNFLGLPI RPGGKECQYY MRTGSCRYAT  300
NCRFHHPDPT NVASREPVLE HENGGDIPQQ NVQGPSQPNV SIWPADQRTL NEHHAPFLAP  360
APSYSAGMIP PQGMIPPQGM YPTPEWSGYH QVPLSPYYPP GTPFHHFPGP PVNHQIYRGA  420
DVPGHQQLPS DEYPERPGQP ECQHFVKSGY CKFGVKCKYH HPRSLMPRPP PPPPQAGTLS  480
PLGLPLKPDQ PVCTYYGRYG VCKYGPACLY NHPFNFGHPV PAAGPPLAGQ YLTPGNYTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g39137.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758740.10.0zinc finger CCCH domain-containing protein 65 isoform X2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0Q3HDZ90.0A0A0Q3HDZ9_BRADI; Uncharacterized protein
STRINGBRADI4G39137.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Representative plantOGRP1476044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-56C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]