PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g39137.5.p

Common Name

BRADI_4g39137, LOC100833617

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 424aa MW: 46600.3 Da PI: 7.0491

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g39137.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.7e-09	120	143	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +e+C+++ +G Ck+G +Ck+ H+ Bradi4g39137.5.p 120 QEECKYYKTFGGCKFGKSCKYLHP 143 699********************8 PP
2	zf-CCCH	31.2	3.8e-10	169	191	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+y +C+F+H+ Bradi4g39137.5.p 169 KECQYYMRTGSCRYATNCRFHHP 191 79********************9 PP
3	zf-CCCH	31.5	3e-10	321	347	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+G +Ck++H++ Bradi4g39137.5.p 321 PGQPECQHFVKSGYCKFGVKCKYHHPR 347 5789*********************96 PP
4	zf-CCCH	26	1.6e-08	373	398	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG+ C ++H++ Bradi4g39137.5.p 373 DQPVCTYYGRYGVCKYGPACLYNHPF 398 6899********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0064	117	144	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.31	117	145	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-5	121	145	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-6	121	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	123	142	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.2E-5	165	192	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.342	165	193	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-6	168	192	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.5E-7	169	191	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-4	171	190	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.7E-5	320	347	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.347	320	348	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.6E-8	322	347	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	324	348	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-4	326	347	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.004	371	398	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.713	371	399	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-5	372	399	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.9E-6	373	398	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MTCMSVCVCL QAKGSGSSGS SNKASSPPDD DQTPKEEYEE DLVPDIAAEV DSLGFVNKGS 60 KSSNSGDLMK TSYEKGQMEP KELKIDATEK GTYPKKFDET DDQKVAKEKR RDTVSEGSAQ 120 EECKYYKTFG GCKFGKSCKY LHPGGKERKA EVEEVELNFL GLPIRPGGKE CQYYMRTGSC 180 RYATNCRFHH PDPTNVASRE PVLEHENGGD IPQQNVQGPS QPNVSIWPAD QRTLNEHHAP 240 FLAPAPSYSA GMIPPQGMIP PQGMYPTPEW SGYHQVPLSP YYPPGTPFHH FPGPPVNHQI 300 YRGADVPGHQ QLPSDEYPER PGQPECQHFV KSGYCKFGVK CKYHHPRSLM PRPPPPPPQA 360 GTLSPLGLPL KPDQPVCTYY GRYGVCKYGP ACLYNHPFNF GHPVPAAGPP LAGQYLTPGN 420 YTV*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MTCMSVCVCL QAKGSGSSGS SNKASSPPDD DQTPKEEYEE DLVPDIAAEV DSLGFVNKGS  60
KSSNSGDLMK TSYEKGQMEP KELKIDATEK GTYPKKFDET DDQKVAKEKR RDTVSEGSAQ  120
EECKYYKTFG GCKFGKSCKY LHPGGKERKA EVEEVELNFL GLPIRPGGKE CQYYMRTGSC  180
RYATNCRFHH PDPTNVASRE PVLEHENGGD IPQQNVQGPS QPNVSIWPAD QRTLNEHHAP  240
FLAPAPSYSA GMIPPQGMIP PQGMYPTPEW SGYHQVPLSP YYPPGTPFHH FPGPPVNHQI  300
YRGADVPGHQ QLPSDEYPER PGQPECQHFV KSGYCKFGVK CKYHHPRSLM PRPPPPPPQA  360
GTLSPLGLPL KPDQPVCTYY GRYGVCKYGP ACLYNHPFNF GHPVPAAGPP LAGQYLTPGN  420
YTV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g39137.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014758740.1	0.0	zinc finger CCCH domain-containing protein 65 isoform X2
Swissprot	Q2QTY2	0.0	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	A0A2K2CT86	0.0	A0A2K2CT86_BRADI; Uncharacterized protein
STRING	BRADI4G39137.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-57	C3H family protein

Link Out ? help Back to Top
Phytozome	Bradi4g39137.5.p
Entrez Gene	100833617

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]