PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g39420.1.p
Common NameBRADI_4g39420, LOC104584744
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 259aa    MW: 27844.2 Da    PI: 10.1889
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g39420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.1e-221966249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      ri+++  rqv fskRr+g++KKA ELSvLC+++va ++fs+ gk y +
  Bradi4g39420.1.p 19 RIDSDQARQVCFSKRRAGLFKKAGELSVLCGVQVAAVVFSPAGKAYSF 66
                      8*******************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-321069IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-271080IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.1561070IPR002100Transcription factor, MADS-box
CDDcd002659.03E-361179No hitNo description
PRINTSPR004042.6E-191232IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-193247IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-194768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSRRRPTTRL GRQKIKIRRI DSDQARQVCF SKRRAGLFKK AGELSVLCGV QVAAVVFSPA  60
GKAYSFGTPS VDAVLDRFLG RGRPAAGTGG RRAAAGKSAV IEELFRQYAE LLVQVDVEKK  120
RAEALRKELK AAAAAPGAPK WLDCECELSE LSEAELVDFA AALVEVQAAV QGCADERLRH  180
ALLANANTWA ANVNAARATD AITSAAARMM MMPPQPQQQL GGFGFMEIQA QQLQAMEMMI  240
QGFGPQQGAR FLGPPPPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-161084175MEF2 CHIMERA
6byy_B5e-161084175MEF2 CHIMERA
6byy_C5e-161084175MEF2 CHIMERA
6byy_D5e-161084175MEF2 CHIMERA
6bz1_A5e-161084175MEF2 CHIMERA
6bz1_B5e-161084175MEF2 CHIMERA
6bz1_C5e-161084175MEF2 CHIMERA
6bz1_D5e-161084175MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129RRRPTTRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g39420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693460.0KF469346.1 Brachypodium distachyon MADS-box transcription factor 52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304660.10.0agamous-like MADS-box protein AGL61
TrEMBLI1ITC50.0I1ITC5_BRADI; MADS-box transcription factor 52
STRINGBRADI4G39420.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28460.12e-24AGAMOUS-like 59
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]