PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g40250.1.p
Common NameBRADI_4g40250, LOC100826901
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 223aa    MW: 22842 Da    PI: 5.2468
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g40250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.7e-06546641
          zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ +++  +   C  ++  lC+ C  + H+       H++v 
  Bradi4g40250.1.p  5 CDACGRAAAAVLCCADEAALCRRCDAAVHSAnrlagrHQRVE 46
                      ******99*********************6678999998875 PP
2zf-B_box261.9e-0865105438
          zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                       + C+ ++ek   +fC +++ llC++C ++ H        H+
  Bradi4g40250.1.p  65 PACDICQEKTGYFFCVEDRALLCRSCDVAVHTAtaqassHR 105
                       57***************************995456666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.769147IPR000315B-box-type zinc finger
SMARTSM003362.5E-8547IPR000315B-box-type zinc finger
CDDcd000211.55E-6545No hitNo description
SMARTSM003361.9E-1162109IPR000315B-box-type zinc finger
PfamPF006431.3E-665105IPR000315B-box-type zinc finger
CDDcd000211.62E-865109No hitNo description
PROSITE profilePS501199.367109IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKIGCDACGR AAAAVLCCAD EAALCRRCDA AVHSANRLAG RHQRVELLSS SSTGAGAGEG  60
DGTHPACDIC QEKTGYFFCV EDRALLCRSC DVAVHTATAQ ASSHRRFLIT GVRVGGSANA  120
QQDRHIVSPS SSSANGSSSI NVPPASSRTR GLADNDHLSA QTAARLLGVG GEDEEEAAAA  180
GQQQWPWSDI FADDSGVGNG MDDRQFYNGL VSEPAGSSGL TG*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g40250.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576960.11e-160B-box zinc finger protein 23
SwissprotQ9SYM22e-42BBX22_ARATH; B-box zinc finger protein 22
TrEMBLI1ITL51e-159I1ITL5_BRADI; Uncharacterized protein
STRINGBRADI4G40250.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-28light-regulated zinc finger protein 1