PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g40270.2.p
Common NameBRADI_4g40270, LOC100827202
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 331aa    MW: 35143.3 Da    PI: 8.3377
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g40270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.74.3e-3194146457
       ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                       +rY+eClkNhAas+Gg a+DGCgEfmp+ g+eg+++al C+ACgCHRnFHR+++
  Bradi4g40270.2.p  94 ARYRECLKNHAASIGGSATDGCGEFMPA-GDEGSMDALLCSACGCHRNFHRKDN 146
                       79*************************9.999********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-2794146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2095145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-2995145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1996145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.5E-29207279IPR009057Homeodomain-like
SuperFamilySSF466895.96E-19211277IPR009057Homeodomain-like
TIGRFAMsTIGR015657.3E-27219275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDLSGAQGEL SMPMPIAMHA AAAASPYNLG LHPHHHQLHQ LAGANGRHLS PPPPMTTSSP  60
AAAMAGAEDD EDEYSKSRQL QVVSSGSGVG GGGARYRECL KNHAASIGGS ATDGCGEFMP  120
AGDEGSMDAL LCSACGCHRN FHRKDNTGLL GLTMGAHQYQ QYPTGAHQHH RGLLVGQPGP  180
AAPTRMVMPL SAAMAHHHPH HANANAAGET TSDEGGPRRK RFRTKFTAEQ KARMLGFAEE  240
AGWRLQKLDD AAVHRFCAEV GVKRRVLKVW MHNNKHTLAS RRHQQPPPPP EPDHRYPGLA  300
GAGEDDDRPA NAAAGRSCTS SPSATRLRLD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-252202771875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g40270.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548537e-69AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149687e-69AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCT8355267e-69CT835526.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238617.10.0zinc-finger homeodomain protein 3
SwissprotQ2QW444e-70ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLA0A0Q3EZI80.0A0A0Q3EZI8_BRADI; Uncharacterized protein
STRINGBRADI4G40270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-60homeobox protein 31