PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g40333.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 141aa    MW: 16000.4 Da    PI: 9.4701
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g40333.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-162331950
                      HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeys 50
                      g+lKKA ELSvLC+aev+viifss+gkl+e +
  Bradi4g40333.1.p  2 GLLKKARELSVLCNAEVSVIIFSSQGKLHELA 33
                      9****************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.385136IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-5135IPR002100Transcription factor, MADS-box
PfamPF003192.6E-12231IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-13248IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
VGLLKKAREL SVLCNAEVSV IIFSSQGKLH ELATNGYRSE VVGSQTQNRA LQSQLAEPEI  60
FLVRERDRKG LELWICQMRS TKMQIMQQEI QVLENKNRKN YMHSVFLGSP FSTHPVTNGN  120
PFFSIKFVYG YALYAGERTE *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g40333.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693287e-36KF469328.1 Brachypodium distachyon MADS-box transcription factor 34 mRNA, complete cds.
GenBankKF4693297e-36KF469329.1 Brachypodium distachyon MADS-box transcription factor 35 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289799.17e-57MADS-box transcription factor 33
SwissprotQ2QW553e-36MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A2K2CTG61e-100A0A2K2CTG6_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI4G40357.13e-56(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.16e-18AGAMOUS-like 12