PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g41200.1.p
Common NameBRADI_4g41200
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 456aa    MW: 49796 Da    PI: 5.1025
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g41200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.51.2e-14431791127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgk.......rknr.atk 79 
                       lppG+ F+Pt +e v   L++ ++g++l+    ++   diy + P++L++     +v++++++w+f s+++ ++++ +       r+ r +++
  Bradi4g41200.1.p  43 LPPGVYFSPTRDESV-GILNRWIAGEPLHDtLGFVFVEDIYGSGPEELRRryppaCVRGRKHSWWFLSQTKFQSSK-QppsgvrrRADRrVAT 133
                       79*************.67*********55504556667**********7446776777788889888877655552.2233344444444888 PP

               NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyr 127
                        gyW+   + ke+ +    + g+k+ + fy g     k +kt W+++e++
  Bradi4g41200.1.p 134 GGYWRLEQSRKEIPV----AGGVKNCFGFYLGppGGGKRNKTPWLVEEFT 179
                       9************99....679********66223334469*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-1639198IPR003441NAC domain
PROSITE profilePS5100519.5643200IPR003441NAC domain
PfamPF023653.4E-944179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAIKNKNRKK RASNAASVAP PAMAVAIPPP PKPAANPLQP PPLPPGVYFS PTRDESVGIL  60
NRWIAGEPLH DTLGFVFVED IYGSGPEELR RRYPPACVRG RKHSWWFLSQ TKFQSSKQPP  120
SGVRRRADRR VATGGYWRLE QSRKEIPVAG GVKNCFGFYL GPPGGGKRNK TPWLVEEFTS  180
ALDDGTGKGG VPALYRLYVT PRASNDDVRG IFGEDGIECV RGVKRPMRVV VPAHLFDAVA  240
GLLPPGRVRY RAPAQQHPPP PPPPPPAALL DYEQQGQFFS GAGVLPGQYD YEQQFWGVAP  300
PSEGVLLGQY DQQFWGFRPP PPPPPASPDL FHEVPAGDHG LYGEQFFSEN APPPPPPPPT  360
SPGPFHEIPA GGLEQHDDQM FSGTAPPPPP PPESPGLYLE ISGDNMSVTM DELLQLIDEK  420
PAEEAEKPAE EAEADQEWDS FVTIVDDFER FSQND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g41200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310931.10.0cleavage and polyadenylation specificity factor subunit 6-like
TrEMBLI1ITX50.0I1ITX5_BRADI; Uncharacterized protein
STRINGBRADI4G41200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724
Representative plantOGRP1453134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.14e-08NAC domain containing protein 64