PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g41960.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 824aa    MW: 94733.8 Da    PI: 4.8621
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g41960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.84.3e-2495181290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Y++Y++++GFsvrk k+++ + ++ i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  Bradi4g41960.1.p  95 LYCDYGHRMGFSVRKGKQYYFTGTKIIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDNEGQWRVIQIIPEHNHELV 181
                       69****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-2295181IPR004330FAR1 DNA binding domain
PfamPF105515.7E-32293387IPR018289MULE transposase domain
PROSITE profilePS5096610.039576612IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-4578606IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-4587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MEGASNAIEV DADVICLDNV DDNVQEAQEN GEVQMICDAE NEGQVAFDSQ EQGQDEHFVR  60
DEEDQENNSV TPNHEEFTEE LRTKVVYSEE HAYMLYCDYG HRMGFSVRKG KQYYFTGTKI  120
IRTKDYYCSK EGLKDDEQLT EANFNKPETR TNCKAMVRFR VDNEGQWRVI QIIPEHNHEL  180
VTPGDIHLLR SVRTRSIPKP RALNAMVNAE MQAMNDSLHV NDDGTECHSQ LSIQSYTLFE  240
SEDAQALVGY FRRKTIEQGM FYWDVQVDQE GQMTNFFWRD GRSRVDYDCF GDVVVFDTVF  300
RTNKYNMVCA PFVGINHHMQ NVMFGCAFML DESLTSYEWL FKSFLDSMGG NPPKTILTDQ  360
NDTISNAIEV IFPETHHCFC SWHIEKNLQS YLDTLNASGT FYSMFMKCMK DCESEAEFEE  420
TWAMMLHENN LQGDQWLTDQ FEQRHKWCTA LLMDTFDGGI KSLDRSLSSH SVLSSIADES  480
ISPTNFVLEF DKLVGSWRTN ESLEDIQCNQ SPPEYTVKHN SVLQHAAEVY THKVYKSLET  540
EFLDGYTDTS YSYQEMRCSE TLYRFEFISQ SGPKVWIVSL DTSTMELNCS CKKFETMGIQ  600
CRHAVNALSI KNLDKIPERY VLKRWTKYVR KGTYLFPTDE FPEQDCAAAQ LAYRNRAMLF  660
VYDLLMKSKG HQDTRKLIVD VLENGERSLE SVCELKRMHM HPSGKDKDGS KADKRKKKLT  720
KQDKSSRNVK QAVLPQPDHS VFIDQPNQNE YFATEDIATN SSIGRPFFYQ EYPATSSVST  780
SQIQGHATMH SVSQCAPAPQ PQEFPAYSAV NHPPSTFGGG RDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g41960.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578884.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0Q3LHR90.0A0A0Q3LHR9_BRADI; Uncharacterized protein
STRINGBRADI4G41960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1476744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-81FAR1-related sequence 5