PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g42120.1.p
Common NameBRADI_4g42120
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 372aa    MW: 38014.1 Da    PI: 5.3171
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g42120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.4e-10122184163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       eke kr rr   NRe+Ar   +R++a  +eL++kv+ L+++N+++kke e+  +e+ +l+  +
  Bradi4g42120.1.p 122 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNESMKKEKETVMQEYLTLQETN 184
                       89******************************************************9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-5119185No hitNo description
SMARTSM003381.1E-11122186IPR004827Basic-leucine zipper domain
PfamPF001701.0E-8122184IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.967124187IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.08E-6126181No hitNo description
CDDcd147029.66E-13127177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAGSSQRQCR RGVSAGGGDE DVELDAAMAL ADMAGAVAGA PPQPQAERSG AHGESEEEEA  60
STRLSLELGR VGIQGAAAAS SPCSSSSSAG GCPTHQQALP AVAAPGAGYG ARPRHSTLTE  120
AEKEAKRLRR VLANRESARQ TILRRQAIRD ELARKVADLS SQNESMKKEK ETVMQEYLTL  180
QETNKQLKEQ VVAKTADRSP SPVPIAMPTG TAEAPAQRAE ASQQAAAPPP PPQPGFLYAT  240
AGPSSAPVPV PYVWGTWPPG YEPPAAGAPP PPLCLPPMGA WYYPAPPSYA AQQSFAGAGG  300
SPVGSGGGGT AGEEEDDTDD GADPCSLTLG LEVGGNGGGG GRADKAATAA EARKRRKELT  360
RMKHARPGGD E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g42120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757911.20.0uncharacterized protein LOC100826071
TrEMBLA0A0Q3EXQ10.0A0A0Q3EXQ1_BRADI; Uncharacterized protein
STRINGBRADI4G42120.11e-165(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Representative plantOGRP45691318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.13e-17bZIP family protein