PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g43960.1.p

Common Name

BRADI_4g43960, LOC100830973

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 106aa MW: 10954 Da PI: 6.6513

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g43960.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	83.6	2.2e-26	34	85	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y+eC++NhAa +Gg+avDGC+Ef++ ++ l CaACgCHR+FH+re + Bradi4g43960.1.p 34 VVQYRECQRNHAAGIGGYAVDGCREFLAC----LPPQDLLCAACGCHRSFHKRELA 85 689***********************9....56889*************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-14	34	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.6E-23	35	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.2E-21	36	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.095	37	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MGPKGQANGN STAAASEAEM NKQADQDGSG NKVVVQYREC QRNHAAGIGG YAVDGCREFL 60 ACLPPQDLLC AACGCHRSFH KRELAAAHSD SDFDAHASSF AAAGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g43960.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238788.1	5e-72	mini zinc finger protein 1
TrEMBL	I1IUV5	1e-70	I1IUV5_BRADI; Uncharacterized protein
STRING	BRADI4G43960.1	2e-71	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18835.1	1e-21	mini zinc finger

Link Out ? help Back to Top
Phytozome	Bradi4g43960.1.p
Entrez Gene	100830973