PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g44350.1.p
Common NameBRADI_4g44350
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 273aa    MW: 30822.5 Da    PI: 6.7892
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g44350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.91.8e-17143210258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEE.........EEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvv.........eitYegeHnh 58 
                        Dg++WrKYGqK+++g +++rsYYrCt++  +C+++k v+ ++++ + +         +++Y g+H++
  Bradi4g44350.1.p 143 YDGHQWRKYGQKNINGMQHSRSYYRCTYKerNCSATKTVQEQDHNRSSFsygdetvkyTVVYYGHHTC 210
                       59**************************999*********9998776542222222225777788877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-20131211IPR003657WRKY domain
SuperFamilySSF1182902.09E-17137211IPR003657WRKY domain
SMARTSM007749.8E-24142212IPR003657WRKY domain
PROSITE profilePS5081114.493144191IPR003657WRKY domain
PfamPF031067.1E-22144210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MANNNNNNSM ASSMAAREEI EALLRRQQQL VTQLRALVLP SLLRDNVGGE SAELAVQLFD  60
DVIGCNTSAV SSLLRAGGSL FGAEPAVDDK SLVRKKMLNR AISPGEIRMK EEEQTRPVRS  120
VATKRRRKDG KRSRSLVTNV PHYDGHQWRK YGQKNINGMQ HSRSYYRCTY KERNCSATKT  180
VQEQDHNRSS FSYGDETVKY TVVYYGHHTC NGENISNGNV DLPQLVSMDL DQTVEEMARM  240
TTYQAQEFDE GDLDVPALLE VLDNPLLNWD MW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g44350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239551.30.0probable WRKY transcription factor 66
TrEMBLA0A0Q3PSR00.0A0A0Q3PSR0_BRADI; Uncharacterized protein
STRINGBRADI4G44350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15881913
Representative plantOGRP1477034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.14e-15WRKY DNA-binding protein 38