PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g44360.1.p
Common NameBRADI_4g44360
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 252aa    MW: 28140.5 Da    PI: 5.6989
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g44360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.41.7e-19121188258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEE.........EEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvv.........eitYegeHnh 58 
                        Dg++WrKYGqK+++g ++prsYYrCt++  +C+++k v++++++++ +         +++Y g+H++
  Bradi4g44360.1.p 121 YDGHQWRKYGQKNINGMQHPRSYYRCTYKerSCSATKTVQKQDHNGSSFsygdeavnyTVMYYGNHTC 188
                       59**************************9999***********9998762222222225777788877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-22108189IPR003657WRKY domain
SuperFamilySSF1182901.96E-18115189IPR003657WRKY domain
SMARTSM007742.5E-25120190IPR003657WRKY domain
PfamPF031061.2E-22122188IPR003657WRKY domain
PROSITE profilePS5081115.973122169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAACEEIEVL LRRQQELVTQ LRALILPSLV SRDNVGGGGA SMAELAAQLF EDVIGCNTSA  60
VSWLIRARPA VDDKSLVLVR KNASSTSAAG ERLEKTSPTD QKRRRKGSKQ SRSLVTNVPH  120
YDGHQWRKYG QKNINGMQHP RSYYRCTYKE RSCSATKTVQ KQDHNGSSFS YGDEAVNYTV  180
MYYGNHTCNG ENMNNVVNAD QPQLLSMDLD RTVEEMVQSA TEVQEFDEGE LNMSALLEVL  240
DDPLLNWEII C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-121221881068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g44360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6696611e-47EU669661.1 Triticum aestivum WRKY31 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024319042.10.0probable WRKY transcription factor 38
TrEMBLI1IV030.0I1IV03_BRADI; Uncharacterized protein
STRINGBRADI4G44360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15881913
Representative plantOGRP1477034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-17WRKY DNA-binding protein 46