PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g44850.1.p
Common NameBRADI_4g44850, LOC100822164
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 201aa    MW: 21402.4 Da    PI: 7.3613
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g44850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.26e-43201201101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck+lrr+Ca+dCv+apyfp e+p++fa vh++FGasnv+k+l++lp  +r da+sslvyeA arardPvyG++g i+ lq+q++ql+++
  Bradi4g44850.1.p  20 PCASCKLLRRRCARDCVFAPYFPPEDPARFATVHRVFGASNVSKMLQELPAAQRADAVSSLVYEATARARDPVYGCAGAISYLQHQVAQLQVQ 112
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la++++++
  Bradi4g44850.1.p 113 LAVAQAQI 120
                       ***99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.38919120IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-4320117IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGCVLGAMAG AQGGSGSSTP CASCKLLRRR CARDCVFAPY FPPEDPARFA TVHRVFGASN  60
VSKMLQELPA AQRADAVSSL VYEATARARD PVYGCAGAIS YLQHQVAQLQ VQLAVAQAQI  120
LHRVHPLSPS PSPAPVAAAL PLHDLQQLQQ QQQQSMQMDY DYDDVKAAYG GGGLVTQNDL  180
MNSLLLQEAC CGLKKESLWT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-46161217112LOB family transfactor Ramosa2.1
5ly0_B8e-46161217112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g44850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238823.11e-139LOB domain-containing protein 4
SwissprotQ8LBW38e-60LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2K2CU801e-143A0A2K2CU80_BRADI; Uncharacterized protein
STRINGBRADI4G44850.11e-139(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-49LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]