PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g45224.2.p

Common Name

BRADI_4g45224

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 227aa MW: 23905.2 Da PI: 8.7531

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g45224.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	108.2	4.3e-34	4	63	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + ++++cprC+s +tkfCyynny++ qPry C++C+ryWt GGalrnvPvG g+r+++k+ Bradi4g45224.2.p 4 PAQNIECPRCHSLDTKFCYYNNYNVLQPRYHCRGCERYWTVGGALRNVPVGVGCRNRNKR 63 67899**************************************************87765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-20	2	63	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-28	6	62	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.114	8	62	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	10	46	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
RPQPAQNIEC PRCHSLDTKF CYYNNYNVLQ PRYHCRGCER YWTVGGALRN VPVGVGCRNR 60 NKRPAASSSR AKLPVAPAAP PASTSMSMSM ADFPNFISSP PPAGIGMLHS QNKAGIGMAM 120 PLPPLSFGIG GTTPMMQPTA AFQCGDQGGG SINNMSVMSL PMSTMGLDWQ PQLNGVNGGA 180 QQLGVTAAMD ISNTTNGGEG SSRGCYLINN NNGGLWQSLM NDSSLM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	62	RNRNKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g45224.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310784.1	1e-167	dof zinc finger protein DOF1.6 isoform X2
TrEMBL	A0A2K2CUD8	1e-164	A0A2K2CUD8_BRADI; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50365	2	2
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-27	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Bradi4g45224.2.p