PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g00530.3.p
Common NameBRADI_5g00530, LOC100830898
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 303aa    MW: 31564.8 Da    PI: 7.1678
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g00530.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013108130123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+k+F++   L  H  +H
  Bradi5g00530.3.p 108 YECKTCSKRFPSFQALGGHRTSH 130
                       99*********999998888777 PP
2zf-C2H211.90.00067205227123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F +   L  H+r+H
  Bradi5g00530.3.p 205 HECSICGAEFASGQALGGHMRRH 227
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-8107130No hitNo description
PfamPF139128.7E-13107132IPR007087Zinc finger, C2H2
SMARTSM003550.1108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.284108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-8200227No hitNo description
PfamPF139121.3E-12204228IPR007087Zinc finger, C2H2
SMARTSM003550.016205227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429205232IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEAAAGGVVV AKGKRSKRQR VHAAAALTPA AAESSSSLSS VVVFASGGEE EEAASGCVTE  60
EEEDMAMCLM LLARGGHGGS TSAAAAMAKE GKKFRSRRRE EGSGELVYEC KTCSKRFPSF  120
QALGGHRTSH KKPRLPTPKA DSEDQKAPSM SPPPPPSPTD PTATALLGIP APGTPPPPPA  180
INPNPKQQRR ERDMAMAIGG SSRVHECSIC GAEFASGQAL GGHMRRHRPL VPAAAASEEE  240
TTTTTTKEKS LLELDLNMPP APCPCDDADV DTTKPAAFVF NVKELLFPAP APASAMVVDC  300
HY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g00530.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751110.10.0zinc finger protein ZAT5
TrEMBLI1IVF00.0I1IVF0_BRADI; Uncharacterized protein
STRINGBRADI5G00530.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-24C2H2 family protein