PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01257.2.p
Common NameBRADI_5g01257
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 539aa    MW: 59185.3 Da    PI: 6.1578
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01257.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.51e-09346426281
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs 81 
                       +++r w  +Dei++L  +i++++++g  p    ++f+e v k++ +   + + + +K+r+L +++ +k++k+ +++ + ++
  Bradi5g01257.2.p 346 RIRREWAPNDEILILEQVINYRHTHGDAPDVKDSGFFESVLKQLgDQSLELRAVKDKMRSLWRRYFEKKHKSTTEHGKCLD 426
                       57899*********************99988777777777666626677889999*************9996665554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.7E-9348431IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MAGKRAAKRS RKPGIPAGSD CSVELGLNGV PVEPQVTENP PPEPAAEVED GEAEEDEGSQ  60
QSEEAEREGE QSDLHSSSKE GSQSEDEEES MEEEEADEPA PALRSPSKGR NGVKKPAPSA  120
RVADAKKPPP SGNNKAAESA SALQSPSKGK SQREGKKTAP SARVVEAEKS PPPGNKRRNQ  180
EPLPSPSPNK RNMVTRSRQT EVPSPSPSKR NMLSRSLQPE VQAPEEHEPE DKGHEPEDQE  240
QHEPEDEGAG IVKNNKKKSK KMRKSAPQAH GPEDEGHEPE DPEEHGPQDE GAGILKGKNK  300
KMRKPAPEEH GPEDQGAEVI KSKKRKSDRI KPAQQQGEPG TSKVKRIRRE WAPNDEILIL  360
EQVINYRHTH GDAPDVKDSG FFESVLKQLG DQSLELRAVK DKMRSLWRRY FEKKHKSTTE  420
HGKCLDNLSE QAWGKPSQVG AKDSSGRNLS KKALRRNSRK DSNGSKTGDK SFEEMCEMYP  480
LLAQEVELIA DIDPSAKSSF TRIDAEVACQ LEKQLDAAKA QVSQVRQTLA ESRADFQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01257.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239627.10.0serine/arginine repetitive matrix protein 1 isoform X1
TrEMBLA0A0Q3KNP80.0A0A0Q3KNP8_BRADI; Uncharacterized protein
STRINGBRADI5G01257.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2906823
Representative plantOGRP1296823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.14e-07DNA-binding storekeeper protein-related transcriptional regulator