PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g01257.3.p

Common Name

BRADI_5g01257, LOC100833026

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GeBP

Protein Properties

Length: 535aa MW: 58839 Da PI: 6.1571

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g01257.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	30.5	9.9e-10	346	426	2	81
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs 81 +++r w +Dei++L +i++++++g p ++f+e v k++ + + + + +K+r+L +++ +k++k+ +++ + ++ Bradi5g01257.3.p 346 RIRREWAPNDEILILEQVINYRHTHGDAPDVKDSGFFESVLKQLgDQSLELRAVKDKMRSLWRRYFEKKHKSTTEHGKCLD 426 57899*******************99988777777777666626677889999***********9996665554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.6E-9	348	431	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MAGKRAAKRS RKPGIPAGSD CSVELGLNGV PVEPQVTENP PPEPAAEVED GEAEEDEGSQ 60 QSEEAEREGE QSDLHSSSKE GSQSEDEEES MEEEEADEPA PALRSPSKGR NGVKKPAPSA 120 RVADAKKPPP SGNNKAAESA SALQSPSKGK SQREGKKTAP SARVVEAEKS PPPGNKRRNQ 180 EPLPSPSPNK RNMVTRSRQT EVPSPSPSKR NMLSRSLQPE VQAPEEHEPE DKGHEPEDQE 240 QHEPEDEGAG IVKNNKKKSK KMRKSAPQAH GPEDEGHEPE DPEEHGPQDE GAGILKGKNK 300 KMRKPAPEEH GPEDQGAEVI KSKKRKSDRI KPAQQQGEPG TSKVKRIRRE WAPNDEILIL 360 EQVINYRHTH GDAPDVKDSG FFESVLKQLG DQSLELRAVK DKMRSLWRRY FEKKHKSTTE 420 HGKCLDNLSE QAWGKPSQVG AKDSSGRNLS KKALRRNSRK DSNGSKTGDK SFEEMCEMYP 480 LLAQEVELIA DIDPSAKSSF TRIDAEVACQ LEKQLDAAKA QVSQNLELIF KYSF*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MAGKRAAKRS RKPGIPAGSD CSVELGLNGV PVEPQVTENP PPEPAAEVED GEAEEDEGSQ  60
QSEEAEREGE QSDLHSSSKE GSQSEDEEES MEEEEADEPA PALRSPSKGR NGVKKPAPSA  120
RVADAKKPPP SGNNKAAESA SALQSPSKGK SQREGKKTAP SARVVEAEKS PPPGNKRRNQ  180
EPLPSPSPNK RNMVTRSRQT EVPSPSPSKR NMLSRSLQPE VQAPEEHEPE DKGHEPEDQE  240
QHEPEDEGAG IVKNNKKKSK KMRKSAPQAH GPEDEGHEPE DPEEHGPQDE GAGILKGKNK  300
KMRKPAPEEH GPEDQGAEVI KSKKRKSDRI KPAQQQGEPG TSKVKRIRRE WAPNDEILIL  360
EQVINYRHTH GDAPDVKDSG FFESVLKQLG DQSLELRAVK DKMRSLWRRY FEKKHKSTTE  420
HGKCLDNLSE QAWGKPSQVG AKDSSGRNLS KKALRRNSRK DSNGSKTGDK SFEEMCEMYP  480
LLAQEVELIA DIDPSAKSSF TRIDAEVACQ LEKQLDAAKA QVSQNLELIF KYSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g01257.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580189.2	0.0	serine/arginine repetitive matrix protein 1 isoform X2
TrEMBL	A0A0Q3E1G3	0.0	A0A0Q3E1G3_BRADI; Uncharacterized protein
STRING	BRADI5G01257.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00610.1	4e-07	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bradi5g01257.3.p
Entrez Gene	100833026