PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01445.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 553aa    MW: 61814.4 Da    PI: 5.1929
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01445.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17199289199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f k +++s+v +  +l lp  f++eh    + ++ + lede+g s++ k+   +++++  l++GW++F+  +++k gD vvF+l+++++f  +
  Bradi5g01445.2.p 199 FAKRMLHSHVVQGFWLGLPSGFCREHLP--KHDVIIELEDEDGHSYDAKY--LGYKQG--LSGGWRNFALRHDIKIGDAVVFQLMRSTRF--K 283
                       8899**********************52..36789***************..999988..9***********************997888..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Bradi5g01445.2.p 284 VYILRE 289
                       888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-19195290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-23195289IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-26197288No hitNo description
SMARTSM010191.6E-19199290IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717199290IPR003340B3 DNA binding domain
PfamPF023621.2E-15199289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAIDQPLKSN GGMLAGAGCS QSAKTEMGQK MALVHQRFAL LDSSSKSDGD DVFEPMDERA  60
IVVRQQSIAA IYDDEVIDYV PLRIVRPDRV ESEEEKPPSA HHKHDTQNTS TALRTYKRKR  120
GKLAGSNSTK SKMAQKPALV DSNSSSRSRS ESDNDDDSAP MVPDVDGRNK YASVQDICSS  180
AWERALEVKE KLPVEDPSFA KRMLHSHVVQ GFWLGLPSGF CREHLPKHDV IIELEDEDGH  240
SYDAKYLGYK QGLSGGWRNF ALRHDIKIGD AVVFQLMRST RFKVYILREN KFTITDGALG  300
LLSLDTSNEN NISKEESSDE DAKSMEDPEV TRVSSKVDDD DDSNNNIPNG EAVDDDIRSP  360
DSDTDFEGVT SFSNFNIVVD GSVINRELFP DHQRRTYYEL CQAQKSFLHK NLLKKINPTL  420
ALGVIIETVN IAEGIRASRA SSHEDFSLWK KILESFEILG MDVTFMRKRV DDLLGLLPSR  480
SLGDCLVADG EHEGYEEVKL EHKCARKKMR ALELKMSSLK NALKEMDAAM EEMESSVKKN  540
AQAMRQIATA PW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01445.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311647.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K2CEU50.0A0A2K2CEU5_BRADI; Uncharacterized protein
STRINGTraes_2AS_FC3F1F39A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-34B3 family protein