PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01445.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 550aa    MW: 61551 Da    PI: 5.1895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01445.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17196286199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f k +++s+v +  +l lp  f++eh    + ++ + lede+g s++ k+   +++++  l++GW++F+  +++k gD vvF+l+++++f  +
  Bradi5g01445.3.p 196 FAKRMLHSHVVQGFWLGLPSGFCREHLP--KHDVIIELEDEDGHSYDAKY--LGYKQG--LSGGWRNFALRHDIKIGDAVVFQLMRSTRF--K 280
                       8899**********************52..36789***************..999988..9***********************997888..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Bradi5g01445.3.p 281 VYILRE 286
                       888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-19192287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-23192286IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-26194285No hitNo description
PfamPF023621.2E-15196286IPR003340B3 DNA binding domain
SMARTSM010191.6E-19196287IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717196287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MLNFQSNGGM LAGAGCSQSA KTEMGQKMAL VHQRFALLDS SSKSDGDDVF EPMDERAIVV  60
RQQSIAAIYD DEVIDYVPLR IVRPDRVESE EEKPPSAHHK HDTQNTSTAL RTYKRKRGKL  120
AGSNSTKSKM AQKPALVDSN SSSRSRSESD NDDDSAPMVP DVDGRNKYAS VQDICSSAWE  180
RALEVKEKLP VEDPSFAKRM LHSHVVQGFW LGLPSGFCRE HLPKHDVIIE LEDEDGHSYD  240
AKYLGYKQGL SGGWRNFALR HDIKIGDAVV FQLMRSTRFK VYILRENKFT ITDGALGLLS  300
LDTSNENNIS KEESSDEDAK SMEDPEVTRV SSKVDDDDDS NNNIPNGEAV DDDIRSPDSD  360
TDFEGVTSFS NFNIVVDGSV INRELFPDHQ RRTYYELCQA QKSFLHKNLL KKINPTLALG  420
VIIETVNIAE GIRASRASSH EDFSLWKKIL ESFEILGMDV TFMRKRVDDL LGLLPSRSLG  480
DCLVADGEHE GYEEVKLEHK CARKKMRALE LKMSSLKNAL KEMDAAMEEM ESSVKKNAQA  540
MRQIATAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01445.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311647.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K2CET40.0A0A2K2CET4_BRADI; Uncharacterized protein
STRINGTraes_2AS_FC3F1F39A.10.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-34B3 family protein