PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01445.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 543aa    MW: 60619 Da    PI: 5.184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01445.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17189279199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f k +++s+v +  +l lp  f++eh    + ++ + lede+g s++ k+   +++++  l++GW++F+  +++k gD vvF+l+++++f  +
  Bradi5g01445.4.p 189 FAKRMLHSHVVQGFWLGLPSGFCREHLP--KHDVIIELEDEDGHSYDAKY--LGYKQG--LSGGWRNFALRHDIKIGDAVVFQLMRSTRF--K 273
                       8899**********************52..36789***************..999988..9***********************997888..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Bradi5g01445.4.p 274 VYILRE 279
                       888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-23185279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-19185280IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-26187278No hitNo description
PROSITE profilePS5086312.717189280IPR003340B3 DNA binding domain
SMARTSM010191.6E-19189280IPR003340B3 DNA binding domain
PfamPF023621.2E-15189279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAIDQPLKSN GGMLAGAGCS QSAKTEMGQK MALVHQRFAL LDSSSKSDGD DVFEPMSIAA  60
IYDDEVIDYV PLRIVRPDRV ESEEEKPPSA HHKHDTQNTS TALRTYKRKR GKLAGSNSTK  120
SKMAQKPALV DSNSSSRSRS ESDNDDDSAP MVPDVDGRNK YASVQDICSS AWERALEVKE  180
KLPVEDPSFA KRMLHSHVVQ GFWLGLPSGF CREHLPKHDV IIELEDEDGH SYDAKYLGYK  240
QGLSGGWRNF ALRHDIKIGD AVVFQLMRST RFKVYILREN KFTITDGALG LLSLDTSNEN  300
NISKEESSDE DAKSMEDPEV TRVSSKVDDD DDSNNNIPNG EAVDDDIRSP DSDTDFEGVT  360
SFSNFNIVVD GSVINRELFP DHQRRTYYEL CQAQKSFLHK NLLKKINPTL ALGVIIETVN  420
IAEGIRASRA SSHEDFSLWK KILESFEILG MDVTFMRKRV DDLLGLLPSR SLGDCLVADG  480
EHEGYEEVKL EHKCARKKMR ALELKMSSLK NALKEMDAAM EEMESSVKKN AQAMRQIATA  540
PW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01445.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311647.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP991e-153Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2K2CEU00.0A0A2K2CEU0_BRADI; Uncharacterized protein
STRINGTraes_2AS_FC3F1F39A.10.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-34B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]