PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01445.5.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 541aa    MW: 60602 Da    PI: 5.1895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01445.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17187277199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f k +++s+v +  +l lp  f++eh    + ++ + lede+g s++ k+   +++++  l++GW++F+  +++k gD vvF+l+++++f  +
  Bradi5g01445.5.p 187 FAKRMLHSHVVQGFWLGLPSGFCREHLP--KHDVIIELEDEDGHSYDAKY--LGYKQG--LSGGWRNFALRHDIKIGDAVVFQLMRSTRF--K 271
                       8899**********************52..36789***************..999988..9***********************997888..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Bradi5g01445.5.p 272 VYILRE 277
                       888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-19183278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-23183277IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-26185276No hitNo description
SMARTSM010191.6E-19187278IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717187278IPR003340B3 DNA binding domain
PfamPF023621.2E-15187277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MLAGAGCSQS AKTEMGQKMA LVHQRFALLD SSSKSDGDDV FEPMDERAIV VRQQSIAAIY  60
DDEVIDYVPL RIVRPDRVES EEEKPPSAHH KHDTQNTSTA LRTYKRKRGK LAGSNSTKSK  120
MAQKPALVDS NSSSRSRSES DNDDDSAPMV PDVDGRNKYA SVQDICSSAW ERALEVKEKL  180
PVEDPSFAKR MLHSHVVQGF WLGLPSGFCR EHLPKHDVII ELEDEDGHSY DAKYLGYKQG  240
LSGGWRNFAL RHDIKIGDAV VFQLMRSTRF KVYILRENKF TITDGALGLL SLDTSNENNI  300
SKEESSDEDA KSMEDPEVTR VSSKVDDDDD SNNNIPNGEA VDDDIRSPDS DTDFEGVTSF  360
SNFNIVVDGS VINRELFPDH QRRTYYELCQ AQKSFLHKNL LKKINPTLAL GVIIETVNIA  420
EGIRASRASS HEDFSLWKKI LESFEILGMD VTFMRKRVDD LLGLLPSRSL GDCLVADGEH  480
EGYEEVKLEH KCARKKMRAL ELKMSSLKNA LKEMDAAMEE MESSVKKNAQ AMRQIATAPW  540
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01445.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311647.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K2CEU50.0A0A2K2CEU5_BRADI; Uncharacterized protein
STRINGTraes_2AS_FC3F1F39A.10.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-34B3 family protein